Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2804 ATGGATCGAGATTGGGGTTCAAAGCCAGCGCCTCCGCTCCAGAACGAAGCCGTCGACCGTCGGGAGCGACTTCACCGACTCGCCGTCGAGACTATTGATCTGGCTAAAGATCCCTATTTTATGCGCAACCATCTTGGAAGCTATGAGTGCAAGCTTTGTCTCACCTTACACAACAACGAGGGGAATTACTTAGCGCACACACAGGGTAAGCGGCATCAGACTAATTTGGCTAAGAGAGTAGCTCGCGAGGCTAAAGAGGCACCTGCTCGGCCTCAGCCTCACAAGCGTGAAGTCTCAGTTCGCAAGATAGTCAAGATTAGTCGACCTGGGTACCGAGTGACTAAGCAATATGATCCAGAGACAAAGCAGAGATCTCTTCTTTTCTAG 387 0.509 MDRDWGSKPAPPLQNEAVDRRERLHRLAVETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRVAREAKEAPARPQPHKREVSVRKIVKISRPGYRVTKQYDPETKQRSLLF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2804 128 SUPERFAMILY beta-beta-alpha zinc fingers 43 80 IPR036236 -
Dere01g2804 128 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 128 - -
Dere01g2804 128 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g2804 128 Pfam Zinc-finger of C2H2 type 48 72 - -
Dere01g2804 128 ProSiteProfiles Zinc finger matrin-type profile. 48 78 IPR000690 GO:0003676|GO:0005634|GO:0008270
Dere01g2804 128 SMART ZnF_U1_5 45 79 IPR003604 GO:0003676|GO:0008270
Dere01g2804 128 Gene3D Classic Zinc Finger 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2804 Dere-ChrDere01 42955396 42957185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2804 1 128 C2H2 Transcription Factor Family AT2G32600 83.333 2.57e-69 207