Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2796 ATGAACTTAGTCAAGGAGAGTGGAGTGATCAAAGAAAATGATGGAGTTGAGAATAAGAAAAGAGATAAAAAAAGAAATAAGTGGGTCATCCCTCAAGCAAGGTCGCTTCTCCCTCAAGATCTTTACTCCCAAGGGGTGAGGCCAAGTAGCAGAAGCTCCGATGATCAGTCGTCGTCGAGATCAGGCATCATGGTTAGCTTGATGGATGAGGTTGACGAGCAATACGCATACCAGACGACCATAAACATAGGAGGCCATGTTTTCAGAGGAATTCTCTATGATCAAGGCCCCGATACCAGTTACATGTCCACTGGTGACACCTTTTCTAGTGGAGGAGTTCAATCATTCAATCTCATTGCCACTACTAGCACCTCTGCTCTACCGACAACCGTAACAAGTGGTGGTGCTGCTGTTGTGGCTTCGAGCACAACAAGCAAAAAGGCTCTGTCGTGA 453 0.4614 MNLVKESGVIKENDGVENKKRDKKRNKWVIPQARSLLPQDLYSQGVRPSSRSSDDQSSSRSGIMVSLMDEVDEQYAYQTTINIGGHVFRGILYDQGPDTSYMSTGDTFSSGGVQSFNLIATTSTSALPTTVTSGGAAVVASSTTSKKALS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2796 150 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 64 144 IPR007818 GO:0003700|GO:0006355
Dere01g2796 150 NCBIfam LRP1 C-terminal domain 65 97 IPR006511 -
Dere01g2796 150 Pfam Domain of unknown function (DUF702) 61 98 - -
Dere01g2796 150 MobiDBLite consensus disorder prediction 10 24 - -
Dere01g2796 150 MobiDBLite consensus disorder prediction 37 64 - -
Dere01g2796 150 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2796 Dere-ChrDere01 42873196 42874181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2796 63 133 C2H2 Transcription Factor Family AT2G21400 47.887 1.40e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere01g2796 DUF702 7.7e-14 No_clan