Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2783 ATGAACACCAACGTGGAAGCCCCACCCCAACTAGGCTCCTTATTAAGCCCTCTCATTATCACCGCCGCCTCCCTCGTCGGCTCCTGTCTGGTGTTAGCAGCATACCACTACATTCTCCTCCGGTTCTGCATTGCCAGCGAACGAGAATTGCACCAACACATCGCCCGCGCGCCTCCGCCTCATCCTCCTCCTCAAGACATGCCCTCCGGTGTCGACCCTGAAATCCTCAAGAAAATCCCAATCCTCTGTTACTCGCACCACCATACAGGTGACTCAGCCTTCCGTTTGGACCAAACTGAATGTGCTATTTGCCTGGGCGAATTGGAGGATGGCGACAAGCTGCGATTATTGCCTTCTTGCACTCACGCTTTTCACATTGTTTGTATCGATCTCTGGTTCGCTGAACATTCCAATTGTCCCATTTGTCGATTACCCTTAGCTATAACCTCTGCCTCCTCCGTTCCTGTGGATTCTGAAAATAATGATGCCCAACAAGTGGTGTCTCCTCACGTGCCTCCCCTCGAAAGTGATCATAAAGTGCCTGATTTGAGTGCTTCTGGTTCCAGATCGCAACCCCATCCTGCCTTGCATCAGCACTCGCTCTCAGTGGCGTATCACACGCAGGAGAAACCGAAAGATTTGGTTATGGGGTTGAAGAGGTCCCTTTCCTTGGATCAGTCATCTTTTATTTCTGTTATCATTCAAAGAGAGGAGGAAAAAGCTTCCACTTCTTCTTTTTCTTCTTCCTCTGCTGCCACAGGGATTGGGATTGCTCAGAGTAAAGCAAAATCATTGCGGCAGCTGGATCAGGTGTCGTCCATGTTGATGACGTCCTTCTCCCAATTGCTCAACAATCGAAATGAAAGATTGAAAGGAATTTTACCAAATTGA 891 0.4905 MNTNVEAPPQLGSLLSPLIITAASLVGSCLVLAAYHYILLRFCIASERELHQHIARAPPPHPPPQDMPSGVDPEILKKIPILCYSHHHTGDSAFRLDQTECAICLGELEDGDKLRLLPSCTHAFHIVCIDLWFAEHSNCPICRLPLAITSASSVPVDSENNDAQQVVSPHVPPLESDHKVPDLSASGSRSQPHPALHQHSLSVAYHTQEKPKDLVMGLKRSLSLDQSSFISVIIQREEEKASTSSFSSSSAATGIGIAQSKAKSLRQLDQVSSMLMTSFSQLLNNRNERLKGILPN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2783 296 CDD RING-H2_EL5-like 100 143 - -
Dere01g2783 296 PANTHER RING-H2 FINGER PROTEIN ATL16 13 232 IPR044600 GO:0016567|GO:0016740
Dere01g2783 296 MobiDBLite consensus disorder prediction 154 197 - -
Dere01g2783 296 MobiDBLite consensus disorder prediction 183 197 - -
Dere01g2783 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 147 IPR013083 -
Dere01g2783 296 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Dere01g2783 296 SMART ring_2 101 142 IPR001841 -
Dere01g2783 296 Pfam Ring finger domain 100 143 IPR001841 -
Dere01g2783 296 SUPERFAMILY RING/U-box 77 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2783 Dere-ChrDere01 42707238 42708128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2783 69 162 C3H Transcription Factor Family AT3G10910 40.426 9.99e-21 85.9