Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2777 ATGGCGGAACCAGCCTCTGGGGACTCCTCCAATCCCACTCCGCCGCCGGCGCCTGATCGCAAAAGTTGGGCTGATGAGGCGGAGGAAGAAGTTCCAGAACAAACGAGTGCTGTATCGACGAGTTCGACGACAGCCTCGTCGCTTGATGTTGACGAATTAACAATCGACGTGAACAAGAAGGCTACTCAGGTTTTGGACGAACCCGATGATTCCAACATACGCGCGGTTACATCAGGTGATACTCCGTATACTTCAGCGAGCACCTTTGAAGATTTAAATCTCTCTCCAGAGCTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCGATGATTCTGAATCCTCCTCATAACGATTTGATCGCACAGGCACATAATGGTTCTGGGAAGACAACATGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTATGGTGCAGGCTCCTCAGGCTCTTTGCATTTGTCCTACTAGGGAATTGGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAAGTACACAGGGATTAGTTCTGAATTTGCCATTCCCACAGACAGCAGAGATTCTATTCCAATATCAAAACGAGCACCTATAATGGCACAAGTGGTGATTGGGACTCCTGGCACAATAAAGAAATGGATGTCATTTAAGAAACTAGGTGTAAGCAGACTGAAAATTCTAGTTTTTGATGAGGCCGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGACTCCTTGAGGATAATGAAAGAAATAGAAAAAGTCAATATGCACTGTCAGGTTCTTCTTTTTTCTGCTACATTTAATGACACTGTCAAGAATTTTGTTTCAAGGATAGTTAAGAAGCATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTAGAGGCAGTAAAGCAATACAAGGTGAACTGTCCTGATGAACTCTCTAAGATTGAAGTGATCAAAGATTACATATTTGAGATAGGGGAGAATGTGGGGCAAACTATTGTGTTTGTGCGCACAAGAAATAGTGCAAGGATGTTGCACAAATCACTTGTTGATTTGGGTTATGAGGTTACTTCCATACAAGGTGCTCTTGAAAATGAAGAGAGAGACAAGATTGTCAAGGAATTCAGAGATGGTTTGACTCAAGTTCTTATATCAACTGATGTCCTTGCCCGAGGCTTTGATCAGCAACAGGTGAATTTGGTTATCAATTATGATCTCCCCGTGAAACATACAGCCGAATATACCCGTGAACCCAAGCCCGACTATGAGGTATATTTGCACAGGGTTGGTAGGGCAGGACGTTTTGGACGCAAGGGTGCTGTTTTTAACTTGGTATGTGGTGAAAGGGATGAAATGCTCATCGCAAAGATTGAGAAGCATTTTGGCACCCATATAACTGAGGTCCAACAGAAAAATGTTGAAGACTATAAACGTGCCCTTAAGGAGGCTGGTTTACTGCAATAA 1491 0.4279 MAEPASGDSSNPTPPPAPDRKSWADEAEEEVPEQTSAVSTSSTTASSLDVDELTIDVNKKATQVLDEPDDSNIRAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHNDLIAQAHNGSGKTTCFVLGMLSRVDPMVQAPQALCICPTRELAIQNMEVLRKMGKYTGISSEFAIPTDSRDSIPISKRAPIMAQVVIGTPGTIKKWMSFKKLGVSRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNMHCQVLLFSATFNDTVKNFVSRIVKKHHNQLFVKKEELSLEAVKQYKVNCPDELSKIEVIKDYIFEIGENVGQTIVFVRTRNSARMLHKSLVDLGYEVTSIQGALENEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPKPDYEVYLHRVGRAGRFGRKGAVFNLVCGERDEMLIAKIEKHFGTHITEVQQKNVEDYKRALKEAGLLQ 496
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2777 496 MobiDBLite consensus disorder prediction 1 47 - -
Dere01g2777 496 Gene3D - 65 303 IPR027417 -
Dere01g2777 496 MobiDBLite consensus disorder prediction 33 47 - -
Dere01g2777 496 CDD SF2_C_DEAD 310 454 - -
Dere01g2777 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 493 IPR001650 -
Dere01g2777 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 116 IPR014014 GO:0003724
Dere01g2777 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 466 IPR027417 -
Dere01g2777 496 CDD DEADc_DDX19_DDX25 94 294 - -
Dere01g2777 496 Gene3D - 304 493 IPR027417 -
Dere01g2777 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 297 IPR014001 -
Dere01g2777 496 Pfam DEAD/DEAH box helicase 113 285 IPR011545 GO:0003676|GO:0005524
Dere01g2777 496 SMART helicmild6 352 445 IPR001650 -
Dere01g2777 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 474 - -
Dere01g2777 496 SMART ultradead3 107 313 IPR014001 -
Dere01g2777 496 Pfam Helicase conserved C-terminal domain 323 445 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere01g2777 Dere-ChrDere01 42637518 42641510 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2777 80 484 Eukaryotic Initiation Factors Gene Family AT1G72730 35.507 2.76e-68 223