Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2774 ATGTCGAATCCTACGACGGTCGCCGCCTCCTCGGTTTCGCTATACGTCGGCGATCTCCACCCCGACGTCACCAATGATCAGCTGTTCGAAGTATTCTCCGAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGCAAGGACATCTCTACCGGCAGGTCGCTCTGTTACGGCTACCTCAACTTCGTCTCTCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTACACTAAATGGAAAAGCGATGAGGGTCATGTGGTCAAATCGTGATCCTGGTGCAACTAAAAGTGGCATAGGTAACTTGTTTGTTAAGAACTTAGTGGAATCAATAGATAATCTGGGATTACAAGATATGTTTAAAAAATTTGGTATTATTTTGTCATGCAAAGTTGTCATGTCTGAGGATGGAAAAAGCAAAGGATATGGCTATGTCCAATTTCAGTCAGAGGAATCTGCAAATGCTGCCATTGAGAAGCTGAATGGCTCTATTGTTAAAGGCAAGCAGATCTATGTTGGGAAGTTTGTCAAAAAAATTGACCGCATGTTGCCTAATCCTGATGCCAAATATACAAATTTGTACATCAAGAATTTGGACCCAAAAGCTACAGAAGAGCTTCTACAAGAAAAGTTTTCACCTTTTGGGAAAATTGTTAGCTTAGTTATCGCAAAGGATGACAATGGCATTTCAAAGGGTTTTGGCTTCGTGAACTACGATAACCCAGATGATGCTAGACGGGCAATGGAAGGAATGAATGGGTCACAGCTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCCGAACGTGAGCTTATTTTGCAACATCAGTTTGAGGAGAAGCGTAAGGAACAAATCTTAAAATACAAGGTATCAAACGTTTATGTGAAGAACATTGATGATGATGTAAGTGATGAAGATCTACGGGATCTTTTTCGTGCATGTGGCTCGATAACATCTGCAGTAGTTATGCGAGATGTCAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACCCCTGAGGAGGCCAATAAAGCTGTGAATGCTTTTCATGGATATATGTTTCATCGCAAACCACTGTATGTTGCTATTGCTCAAAGGAAGGAGGAAAGGCAAGCACAATTGCAGCTCCAGCATGCACAGCGAATAGCAGGACTAACTGGACCTTCAATAGCTGTTTTTCCGGGTGGATATTCTCCTTACTACTATGCACCTACTGGTGCTGTTTCACAGGTGCCTTCTCGACCTGGGCTAATGTACCATCCTCTGGGGTTGACGCCAGGATGGAGGGCTAATGGCTTTGTACCTCCTACCAGACCATTTCAACAGTCACCAGTTCCTATGGTTTCTAATATTACAAGGCAAAATAGGCAAAACAGGGGCAGGATTAATGGGCATACAATTTCTCAGGGAAATGCTCACTCGGGTACACATATGCCACAATTGCGTCAGCCTTTTCAGTCAGTGACCTCTTCAAAAGAATCAAGTACTCAGCAGCGGGCTGGGCAGACCAAGTATGTGCCCAGTGGGCGCCAGCCTGAAACGGAGAAAGTATCTGGAGTTTCATCTGGTGGTTCTAACTCTGCTGGAGGATCCCCGGGATCAGAAATGCTGCACAGTATGCTTGCTGCTGCTACTCTGGAGCAGCAGAAACAGATACTTGGCGAGCATCTATACCCACTAATCCAGAAACTCAAGCCTGGCTTAGCAGCGAAGATTACAGGGATGCTCTTGGAGATGGACAATGGGGAGTTGCTGCTTCTCCTGGAGTCCCCGGATTCTCTGACTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTCAAAAACTCTAAGACCAAAGTTTCTGGCCAGGATGTACTTCATCCGAGTTTCCTGTCAGCTGAAGTTGCAGTGAACTGA 1908 0.4518 MSNPTTVAASSVSLYVGDLHPDVTNDQLFEVFSEFKSLTSVRVCKDISTGRSLCYGYLNFVSPQDAIRAIEVKNHSTLNGKAMRVMWSNRDPGATKSGIGNLFVKNLVESIDNLGLQDMFKKFGIILSCKVVMSEDGKSKGYGYVQFQSEESANAAIEKLNGSIVKGKQIYVGKFVKKIDRMLPNPDAKYTNLYIKNLDPKATEELLQEKFSPFGKIVSLVIAKDDNGISKGFGFVNYDNPDDARRAMEGMNGSQLGSKILYVARAQKKAERELILQHQFEEKRKEQILKYKVSNVYVKNIDDDVSDEDLRDLFRACGSITSAVVMRDVKGISKGFGFVCFSTPEEANKAVNAFHGYMFHRKPLYVAIAQRKEERQAQLQLQHAQRIAGLTGPSIAVFPGGYSPYYYAPTGAVSQVPSRPGLMYHPLGLTPGWRANGFVPPTRPFQQSPVPMVSNITRQNRQNRGRINGHTISQGNAHSGTHMPQLRQPFQSVTSSKESSTQQRAGQTKYVPSGRQPETEKVSGVSSGGSNSAGGSPGSEMLHSMLAAATLEQQKQILGEHLYPLIQKLKPGLAAKITGMLLEMDNGELLLLLESPDSLTAKVEEAVQVLKNSKTKVSGQDVLHPSFLSAEVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2774 635 CDD RRM4_I_PABPs 294 371 - -
Dere01g2774 635 CDD RRM3_I_PABPs 190 269 - -
Dere01g2774 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Dere01g2774 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Dere01g2774 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Dere01g2774 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Dere01g2774 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Dere01g2774 635 MobiDBLite consensus disorder prediction 460 540 - -
Dere01g2774 635 FunFam Polyadenylate-binding protein 277 385 - -
Dere01g2774 635 Gene3D - 2 99 IPR012677 -
Dere01g2774 635 FunFam Polyadenylate-binding protein 536 622 - -
Dere01g2774 635 Gene3D - 177 274 IPR012677 -
Dere01g2774 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Dere01g2774 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Dere01g2774 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Dere01g2774 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Dere01g2774 635 SMART poly_2 550 613 IPR002004 GO:0003723
Dere01g2774 635 FunFam Polyadenylate-binding protein 101 181 - -
Dere01g2774 635 CDD RRM2_I_PABPs 98 174 IPR045305 -
Dere01g2774 635 SUPERFAMILY RNA-binding domain, RBD 291 385 IPR035979 GO:0003676
Dere01g2774 635 FunFam Polyadenylate-binding protein 182 276 - -
Dere01g2774 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Dere01g2774 635 Gene3D - 537 626 - -
Dere01g2774 635 SUPERFAMILY RNA-binding domain, RBD 8 92 IPR035979 GO:0003676
Dere01g2774 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Dere01g2774 635 PANTHER RNA BINDING PROTEIN 13 75 - -
Dere01g2774 635 MobiDBLite consensus disorder prediction 460 538 - -
Dere01g2774 635 Gene3D - 100 176 IPR012677 -
Dere01g2774 635 SUPERFAMILY PABC (PABP) domain 542 621 IPR036053 GO:0003723
Dere01g2774 635 SUPERFAMILY RNA-binding domain, RBD 101 271 IPR035979 GO:0003676
Dere01g2774 635 Gene3D - 275 384 IPR012677 -
Dere01g2774 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Dere01g2774 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Dere01g2774 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Dere01g2774 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Dere01g2774 635 Pfam Poly-adenylate binding protein, unique domain 545 610 IPR002004 GO:0003723
Dere01g2774 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Dere01g2774 635 FunFam Polyadenylate-binding protein 4 99 - -
Dere01g2774 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 13 611 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2774 Dere-ChrDere01 42607250 42611982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2774 11 633 Eukaryotic Initiation Factors Gene Family AT2G36660 52.070 0.0 608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2774 01 42607250 42611982 Dere02g1091 02 10428826 10434053 CCT
Dere01g2774 01 42607250 42611982 Dere01g2774 01 42607250 42611982 ECH