Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2769 ATGGATCGATCTCGGAAACACCAGGTATCCTTGAGAGGAGCAAGTGCGAAGGAGATAACAAGGGATGCCCTTCTTGAAAAGGTATCCCGGGAAAGAGAGCTTCGCAATTATGCAAAACGAGCTACTGCTGCTGCTCTCTTCGTTCAGAGAGTATGGAGGCGCTACAAAGTTACAAGGATGGTTGCCCAGCAACTTCAGCAGGAGTGGGAGATATTGGTGAATCATTACACTGGTGAAATGACAGCGATGTGGATTGCAAACAATTTGTTGCGACCATTTCTGTTTTTTATAACCTGTCTGTCAGCTGAGCATCAGAAGGTTCATAGGAAGAAAATAGACTCCATGAGGATTTGCTTTACAATCTTATTGGAAAGCCTGAACTCTTCTGATTCAGAGAAGAATTTCTGCTCTCTGGCAACTGGTATACCTGAAGAAAAGAGGATTTGGAATTTCCAAGCACGAAGGCTGACTTCCCTTGGCTTTGTCATTCTTTCAGAGTTTAGCAAAGGCATTTCAAGGGATCAAGATATTGCTTTGGTTACCTCCCTTGCAATGCGCATTCTTGTTATGTTAACTGATCTGAAAGGATGGAAATGCGTTACAGATGACAATTGTCAAGATGCCGATATAGCGGTGAAAGGTTTAATTGAGTACATGGGAAGTAATGCCAGTGGTAGTTATGCGTCTATTGGTAGATATATTAGTTCATGGGACAATTATTCTTTGCAAACAAAGAATACTAATCAGACAGATGATAAAATTTTAATTACTGCAAGTACAATAACTTTAGCTTTGCGGCCGTTCTATCTGAGAAATTTTGATGTAAAAGGACCTGCTATGTTGGATGTGAACCATGCTGCTAGGCAGTATTTTGTATATATGCTGACAATTCCTTGGCTTGCGAAACGTCTGCCATCTGTTCTTCGACCAGCTTTAAAGCACAAATCTATTTTGTTCCCTTGCTTTCTGGATATATTGACTTTGAAAGAGAATATTTCAATGGAGATATCTCATTTGGTTCATTTAGAGTCTCTTGTCTCTTCAAAGGCAATTCCGCCAGTTGGTTGGGCTCTCACTAACATTATCTGCCTAGCAATGGGGAGTGAGAATGATTCTGAGGATCCTGAATGCTTCCATCAAGGTTTAGACCATGCATTATATGTCCATGTTGTTAACACTCTTGCAGAAACCCTACTGGCTCATCTTGATAAGGTTGGATGGATTAGAAAGGGGAAGAAGGTTATCCAAAATGATGTTGAAACTTCAACAGAGCCCATGGATACATTTCTTTATGAAAGTGAAGCAACATATGACTCCTTGCTGATTTCATACATAGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTTAAAAATCTTTTGGCTGCAGCAAATGGAGATGCTGCTGACAGGGCTGAGATTCTGCTGCCGAATGGTCTGGAAGGCTTGGGCAAGCTGGATTTATGTGATGTTGCACTTTTTTATTCTAACATGATAAGAATATATTCACTCTTGCATCCAATTCGTGGCTTCTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGACAGGGTCTGGCATGTTATGGAGGATTCCCTTTTTCATGGAGACAGTCATATTTCTGATAATCATGTGAGTGAAAACAGCATACATAAAGCTTCTGAGAGGAGGCTAAAACATGTCAGTAAGGATGGGGCTAATATGTGGGTCAGTGTTCTTCATAAATTAACTGGTAAGTCCCAAGCTTCAACTAATTATGCGGAACCAAACAGCAATCATCCTGAGCCTAGCCAAGTGAATGAGGATTCGTCTGATGTATGGGACATAGAGCCTATGAGGCATGGTCCACAAGGCATTTCGAAAGATATGTTTGCTCTGCTTCATATTTTTTGTGCCACCTATTCTCACCTACTTTTAGTTCTCGATGACATAGAGTTCTATGAGAAACAGGTTCCATTTAAATTAGAGAAGCAACGAAGAATTGCATCAATGCTCAATACTCTGGTGTATAATGGTTTGTCACATGGTATTAGTCAGCAGAATAGAGCCCTCATGGACTGTGCTATCAGATGCTTACATTTAATGTATGAGAGGAATTGCCGGCATCAGTTTTGTCCTCCTGATTTGTGGCTTTCTCCGGCTAGAAAAAGCCGTCCTCCAATTGTAGTGGCTGCCAGAACTCATGAAGCTTCATCAGTCAATCTAAGACTTGACGATTCATTGGCTACCCCAAGTATGGGTTCTGTTATCACCATAACTCCTCATGTTTTCCCTTTTGAAGAGAGAAATCATGAAATAGTCTCTTTCTCAAGCAACAGTGAAGGAAGAAGCAGAGAGAACTTGAAGCCAAAACTATGGCACGCGTGCGCGGGAGGTATGGTTAAGATGCCATCTCTGAACTCCAAAGTCTTCTACTTTCCTCAAGGACATGCCGAGCATGCCCAGACCAACGTTGATTTCGCGACCTCCTTAAGGATTCCACCACTCATTCTCTGCCGCATGGCAGTAGTGAAATTCCTCACATACCCAGATATCAACAAGGTCTTTGCCAAGATCAAGTTGATTCCTTTGAGAAACTCCGAGATAGATGAGGACAATGATGGTGGCGACGGAAATACTAACAGTCTAATAAGCCTGTGGTGGAGTACTTTCGTGAAGCAGAAGAAACTCGTGGCACGGGACTCTCTGGACTTACCTGGGTGGAGCTCTGGTCTTGGGAACTGTGTGGGACCTTATGGGGCTTTCAGTGTGTTGAAAAGAGAGGAGAACAAGCTTTTGTGGAATAATTCAAATGGTGGGAATTCAAATCCTGGGAGTAATTTGAGTGGGAGAGGAAGAATGAGGCCTGAATCTATGATGGAAGCTCTCACACTTGCTGCGAGTGGTCAAGCATTTGAGGTTGTTCATTCCCCACGAGCTAGTACTCCCGAGTTCTGTGTGAAGGCTGCAAGTGTTAAGGCATGCTTGTATTTCATGCTAGTTGAGATGTTTCGAGAATTCATTAAGATGGACAAAACCTCCCGAAAAATGGCTGGGGAAATTTCTGAACCTGGTTCACGAGCAATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCTCTTGGGACAAGGTTGAAGTCATCCATCCATGTTTCTTTTGTGAGTGCATGTGGCCTTCCTGAGGCTGGCCTAGACTATGGTGGATTATCTAAGGAATTTCTAACTGACATATCAAAAGCAGCCTTCACCCCAGAATATGGGCTATTTTCCCAAACCTCAACTTCTGATAGGCTTCTAAGTCCAAATTCCTCTGCAAGATTTTTGGATAATGGTCTTCAGATGATTGAGTTTCTTGGAAGAGTTGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCCTTCTCACATGTTTTTGTGCAAAAGCTGTTGGGGCGATATAGCTTTCTTGATGAGTTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGCATTATGAAGGTGATGTCAAGGAGCTCTCTCTTGATTTTACTGTTAATGAAGAATCATTTGGCAAATTGCATGTTGTTGAGCTTAGGTCTGGTGGCAAAGATATCTCTGTTACAAATGAGAACAAAATGCAGTACATACATGCAATGGCAGACTACAAACTTAATCAACAGATATTGCCCTTTTCAAATGCCTTCTACAGAGGGTTGACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCAAGTGAATTTAATCAGTTGCTTTCAGGTGGAAATTATGATATCGATATTGATGATTTAAAAAATAACACACGATACACGGGCGGTTATAATGAAGGAAGCCGTACAGTTAAGATATTTTGGCAGGTGATTAAAGACTTTGAACCTGAGGAACGTTGTATGCTTCTTAAATTTGTCACTAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAACTTTTACTATCCACAAGGTTGCAAGTGATGTCCCTCTTTGGGCAACATTTGGAGGACAAGATGTAGAGCGGCTTCCGTCAGCTTCAACCTGCTACAATACTCTTAAGCTTCCTACATACAAACGTCCAAGCACTTTGAGAACAAAGCTTCTCTATGCAATCAGTTCAAATGCTGGATTTGAACTCTCTTAA 4182 0.4146 MDRSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATAAALFVQRVWRRYKVTRMVAQQLQQEWEILVNHYTGEMTAMWIANNLLRPFLFFITCLSAEHQKVHRKKIDSMRICFTILLESLNSSDSEKNFCSLATGIPEEKRIWNFQARRLTSLGFVILSEFSKGISRDQDIALVTSLAMRILVMLTDLKGWKCVTDDNCQDADIAVKGLIEYMGSNASGSYASIGRYISSWDNYSLQTKNTNQTDDKILITASTITLALRPFYLRNFDVKGPAMLDVNHAARQYFVYMLTIPWLAKRLPSVLRPALKHKSILFPCFLDILTLKENISMEISHLVHLESLVSSKAIPPVGWALTNIICLAMGSENDSEDPECFHQGLDHALYVHVVNTLAETLLAHLDKVGWIRKGKKVIQNDVETSTEPMDTFLYESEATYDSLLISYIDQFRPVCQQWHLKNLLAAANGDAADRAEILLPNGLEGLGKLDLCDVALFYSNMIRIYSLLHPIRGFLPVLNMLSFTPGFLDRVWHVMEDSLFHGDSHISDNHVSENSIHKASERRLKHVSKDGANMWVSVLHKLTGKSQASTNYAEPNSNHPEPSQVNEDSSDVWDIEPMRHGPQGISKDMFALLHIFCATYSHLLLVLDDIEFYEKQVPFKLEKQRRIASMLNTLVYNGLSHGISQQNRALMDCAIRCLHLMYERNCRHQFCPPDLWLSPARKSRPPIVVAARTHEASSVNLRLDDSLATPSMGSVITITPHVFPFEERNHEIVSFSSNSEGRSRENLKPKLWHACAGGMVKMPSLNSKVFYFPQGHAEHAQTNVDFATSLRIPPLILCRMAVVKFLTYPDINKVFAKIKLIPLRNSEIDEDNDGGDGNTNSLISLWWSTFVKQKKLVARDSLDLPGWSSGLGNCVGPYGAFSVLKREENKLLWNNSNGGNSNPGSNLSGRGRMRPESMMEALTLAASGQAFEVVHSPRASTPEFCVKAASVKACLYFMLVEMFREFIKMDKTSRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGTRLKSSIHVSFVSACGLPEAGLDYGGLSKEFLTDISKAAFTPEYGLFSQTSTSDRLLSPNSSARFLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYEGDVKELSLDFTVNEESFGKLHVVELRSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTVKIFWQVIKDFEPEERCMLLKFVTSCSRAPLLGFKYLQPTFTIHKVASDVPLWATFGGQDVERLPSASTCYNTLKLPTYKRPSTLRTKLLYAISSNAGFELS 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2769 1393 FunFam E3 ubiquitin-protein ligase UPL7 1268 1392 - -
Dere01g2769 1393 SMART hect_3 1043 1393 IPR000569 GO:0004842
Dere01g2769 1393 Pfam HECT-domain (ubiquitin-transferase) 1080 1393 IPR000569 GO:0004842
Dere01g2769 1393 SUPERFAMILY Hect, E3 ligase catalytic domain 1025 1386 IPR035983 GO:0004842
Dere01g2769 1393 Gene3D Hect, E3 ligase catalytic domains 1027 1265 - -
Dere01g2769 1393 Coils Coil 1393 1393 - -
Dere01g2769 1393 ProSiteProfiles HECT domain profile. 1049 1393 IPR000569 GO:0004842
Dere01g2769 1393 Gene3D Hect, E3 ligase catalytic domain 1268 1392 - -
Dere01g2769 1393 Gene3D Hect, E3 ligase catalytic domain 1151 1230 - -
Dere01g2769 1393 MobiDBLite consensus disorder prediction 585 606 - -
Dere01g2769 1393 FunFam Putative Ubiquitin-protein ligase E3C 1151 1230 - -
Dere01g2769 1393 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 997 1393 IPR044611 GO:0000209|GO:0061630
Dere01g2769 1393 CDD HECTc 1025 1391 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2769 Dere-ChrDere01 42567326 42580564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2769 879 992 B3 DNA Binding Superfamily AT4G30080 37.681 7.82e-13 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2769 01 42567326 42580564 Dere01g2769 01 42567326 42580564 ECH