Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2765 ATGTTTGGGAGAATCAACTTTCGGGCTTATTTGGAAAGCCCAAGTGATCCAAGTTCTGCCGCTCGACCCAAAATAGCACGGTTTACGCAGCGGAGAAGATTCACAGCAGCAGCAGTCATGGTTCTCAAGACGGAGCTTTGTCGGTTCAGTGGGGCCAAGATATACCCTGGGAAAGGTATCAGATTTGTTCGTGCTGATTCTCAGGTATTCTTGTTCGCCAACTCGAAATGCAAGAGATATTTCCACAACCGATTGAAGCCATCAAAGCTTACCTGGACTGCCATGTACAGGAAGCAACACAAGAAGGATATTGCCCAAGAAGCTGTGAAGAAGAGGCGTCGTGCTACCAGAAAGCCCTACTCTAGGTCTATTGTTGGTGCTACTTTGGAAATTATTCAGAAGAAAAGAACCGAGAAGCCAGAGGTTAGAGACGCAGCTAGGGAAGCTGCTCTACGTGAAATCAAGGAGAGGATCAAGAAAACAAAGGACGAGAAGAAGGCAAAGAAGGCAGAAGTTATGGCAAAGGCGCAAAAAGCAGGAGGAAAAGGCAGCATTCCAAAGGGTGCTGTACCCAAAGGCCCTAAGCTTGGCGGTGGAGGCGGCAAGCGCTGA 612 0.4837 MFGRINFRAYLESPSDPSSAARPKIARFTQRRRFTAAAVMVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATRKPYSRSIVGATLEIIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKAQKAGGKGSIPKGAVPKGPKLGGGGGKR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2765 203 Gene3D Ribosomal protein L24e 42 103 IPR038630 -
Dere01g2765 203 Pfam Ribosomal protein L24e 43 106 IPR000988 -
Dere01g2765 203 CDD Ribosomal_L24e_L24 42 95 IPR000988 -
Dere01g2765 203 MobiDBLite consensus disorder prediction 157 175 - -
Dere01g2765 203 FunFam 60S ribosomal protein L24 42 103 - -
Dere01g2765 203 PANTHER 60S RIBOSOMAL PROTEIN L24 43 178 IPR000988 -
Dere01g2765 203 Coils Coil 151 175 - -
Dere01g2765 203 MobiDBLite consensus disorder prediction 157 203 - -
Dere01g2765 203 SMART 4TRASH 47 85 IPR011017 -
Dere01g2765 203 ProSitePatterns Ribosomal protein L24e signature. 49 66 IPR023442 -
Dere01g2765 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 45 97 - -
Dere01g2765 203 Gene3D - 108 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2765 Dere-ChrDere01 42517324 42519356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2765 40 196 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 83.439 1.79e-85 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2765 01 42517324 42519356 Dere02g1108 02 10597926 10599889 CCT
Dere01g2765 01 42517324 42519356 Dere01g2765 01 42517324 42519356 ECH