Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2759 ATGAATAAGCCTTGTCCCTTAAACCCAGCCTTCGTCTTCGCCTTTGCTTTGGCTTTCCTCTGTTTCGCAACGTCTCTGAGTTTAGCTCAGAATGACACCCATGCACTCACTCTCTTCCGCCTCCAAGCCGACGCTCATGGCTATCTCCTTCACAACTGGACAGGTGCCGACGCCTGCGCTGCCACGTGGCGCGGAGCTCGCTGCTCCTCCAATGGCCGAATCGTCGCCCTTTCTCTCCCTTCGCTCAATCTCCGAGGACCTATTGACTCACTCTCGTCGCTCGCACACCTCCGCCTCCTTGACCTCCACGATAATCGATTAAACGGCAGCATTGCGCCTCTCTCCAACTGCACGCGCCTCAGGCTCCTTTACCTCTCCGGTAACGACTTCTCCGGCGAGATACCGCCGGAGATAGCTTCGCTTAAGCATCTAGTAAGGCTTGACCTCTCCGACAACAACATCCGCGGCCCAATTCCCAAAGAACTCTCCCAATTGACTCGCCTTCTCACGCTTCGTCTACAGAACAATGTGCTTTCTGGGCTGATTCCGGATCTCTCTGTTTCTCTCGTCAATCTCACGGAGCTCAATATGACCAACAACGAGCTCTACGGACGCTTACCCGATGGAATGTTCAAGAAATTTGGCGACATAAGCTTCTCTGGGAACGAGGGTCTTTGTGGGTCAACCCCATTACCGGATTGTTCCTTCACAGAGAGCCCTCCTTCTTTTGCATCACCTGCGCAGATAGTTCCTTCGAACCCGAGCTCGTTGCCCGAAAGTCAAACAAGCGTAATTGCAACGCCCAAAACCCAACGGCGAAAGGGGTTCAGCCCCGGAGCCATAGTGGCCATAGTGGTGGCGAATTGCGTGGCATTGTTGGTGGTAACCTCTTTCATCGTGGCTCACTGTTGCGCCAGAGGAAGAAGCTCGAATTCGATAGTGGGTAGTGACATTGGGAAGAGGAAAAGCGGGAGCAGTGGCTACGGAAGCGAGAAGAAGGTGTACGCCAATAATGGAGGCGCAGATAGCGATGGGACTAGCGGGACGGACCGAAGCAGGCTTGTGTTCTTCGATAGGAGGAATCAATTTGAGCTGGAGGAATTGCTGCGAGCATCGGCGGAGATGCTGGGGAAAGGTAGCTTGGGGACGGTTTATAAGGCAGTGCTGGATGACGGTTCTACTGTGGCTGTGAAGAGGCTAAAGGACGCAAACCCATGCGCTAGATATGAGTTCGAGCAGTACATGGATGTCATTGGAAAGGTCAGGCACCCCAATATTGTCAAATTCAGAGCATATTACTACGCCAAAGAAGAAAAACTTCTCGTTTATGATTATCTCGCCAACGGAAGCTTGCATTCTCTTCTTCATGGAAACCGTGGCCCAGGAAGAATTCCATTAGATTGGACCACAAGAATCAGCCTGGTATTAGGAGCAGCCAGAGGACTTGCGTGTATTCATGCAGAATACAATGCAGCAAAAATACCTCATGGGAACGTCAAATCTTCCAATGTGCTTCTTGACAAGAACGGCGTTGCTTGCATCTCAGACTTTGGCTTGTCCCTTCTGCTTAACCCTGTTCACGCCATTGCAAGATTAGGTGGATACAGAGCTCCTGAACAAGTAGAAGTGAAGAGACTGTCTCAGCAAGCAGACGTATACAGTTTTGGGGTCTTACTGTTGGAGGTTCTCACAGGGAGAGCTCCTTCCCAGTACCCTTCACCAACTCGACCTCGCATGGACGAAGAGGAACAAGCCGTTGATCTCCCCCAATGGGTTCGATCGGTAGTGAAGGAAGAGTGGACAGCTGAAGTGTTTGATCAAGAACTTCTGCGTTATAAGAACATCGAGGAAGAGCTCGTGTCCATGCTACATGTAGGGTTGGCTTGTGTGGTTCCTCAGCCTGAGAAGAGGCCAACCATGGCAGAAGTTGCTAAGATGATTGAGGATATCAGGGTGGAGCAATCTCCATTAGGAGAGGACTATGATGAATCGCGTAATTCACTTTCACCTTCCCTTGCCACCACTGAAGACGGTCTTACCTAA 2043 0.5115 MNKPCPLNPAFVFAFALAFLCFATSLSLAQNDTHALTLFRLQADAHGYLLHNWTGADACAATWRGARCSSNGRIVALSLPSLNLRGPIDSLSSLAHLRLLDLHDNRLNGSIAPLSNCTRLRLLYLSGNDFSGEIPPEIASLKHLVRLDLSDNNIRGPIPKELSQLTRLLTLRLQNNVLSGLIPDLSVSLVNLTELNMTNNELYGRLPDGMFKKFGDISFSGNEGLCGSTPLPDCSFTESPPSFASPAQIVPSNPSSLPESQTSVIATPKTQRRKGFSPGAIVAIVVANCVALLVVTSFIVAHCCARGRSSNSIVGSDIGKRKSGSSGYGSEKKVYANNGGADSDGTSGTDRSRLVFFDRRNQFELEELLRASAEMLGKGSLGTVYKAVLDDGSTVAVKRLKDANPCARYEFEQYMDVIGKVRHPNIVKFRAYYYAKEEKLLVYDYLANGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLACIHAEYNAAKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQQADVYSFGVLLLEVLTGRAPSQYPSPTRPRMDEEEQAVDLPQWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLACVVPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGLT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2759 680 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 446 659 - -
Dere01g2759 680 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Dere01g2759 680 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Dere01g2759 680 SMART LRR_typ_2 165 188 IPR003591 -
Dere01g2759 680 SMART LRR_typ_2 94 118 IPR003591 -
Dere01g2759 680 SMART LRR_typ_2 141 164 IPR003591 -
Dere01g2759 680 SMART LRR_typ_2 189 213 IPR003591 -
Dere01g2759 680 FunFam pollen receptor-like kinase 1 340 445 - -
Dere01g2759 680 SUPERFAMILY L domain-like 33 214 - -
Dere01g2759 680 CDD STKc_IRAK 376 650 - -
Dere01g2759 680 ProSiteProfiles Protein kinase domain profile. 370 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2759 680 SUPERFAMILY Protein kinase-like (PK-like) 374 647 IPR011009 -
Dere01g2759 680 Gene3D Phosphorylase Kinase; domain 1 345 445 - -
Dere01g2759 680 FunFam Nuclear pore complex protein NUP107 29 184 - -
Dere01g2759 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 652 IPR046959 -
Dere01g2759 680 Pfam Protein kinase domain 374 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2759 680 MobiDBLite consensus disorder prediction 654 680 - -
Dere01g2759 680 Gene3D Transferase(Phosphotransferase) domain 1 446 668 - -
Dere01g2759 680 MobiDBLite consensus disorder prediction 315 347 - -
Dere01g2759 680 MobiDBLite consensus disorder prediction 661 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2759 Dere-ChrDere01 42461505 42463895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2759 25 676 Receptor kinase-like Gene Family AT2G36570 69.743 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere01g2759 Pkinase 3.3e-35 CL0016