Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g2753 | ATGATTTTTTGGTTCTCTACATTGTATTCGTTTGAAGAATTACAGTTTGAAGATATGGGAAAAGATCACACAAATATTTTCCATTTTGAATCTCCTTTCTGTCCATCTCTGTCCACTTTGCAGATGGCACAAGATAAGACTTGCCCAAGCAACAGAAAGAGAAATCAGAGTCATTTTCTTTCTAGAGAAGAGATCTCAATAACATATCCAAGTATCTACTCTCCATCTATCCCATTAAAGCAATTCACCAAACCAGCCAGTCAATTTCTCCATCGCGCTCTAAAGAGAAGGAAAGAGAAGATGGGAAGGCGCGATGCTCTGGTTCTCCTTCCCAATTTGCAAGTAACACTCCGGAAAGAACCTCGCAATTCCATTTTTGTCCCTCTTTCCCTTTCCTTCTGCTCCGAACCTGTTTCAGAGACACTTGACGAGACCCAGCATACCCAAATCAGTGAGCTTCCCACGGATAATAACGATCGATCCGATTCCCAAGAGCAGAAACGGCTTGAACGAGTTCGAAAGTTTCAGAAGTTACTCAAAGAGGGTCGCGGATATGCTGCCCAGAGGTTCATCAAATCCCTTGTTCTCTCTAAAACCCCATTTTCTTCTCCCTTCGAACTCCTCGCCTACTTCTCCTTCTCTTTACCCTCCTTGAAACCCGTCTTCTCAAATATGCTGTTTCGGGCTTGCTCCGAGTCCGAAATGGTCAATGAAGCCACCGAGCTGTACTCTTTGATGAGGGAAGATGGGGTGCTTCCTTCGTCAGGTTCTGTGAATCAGTTACTCAAAACTTTGGTTACTTCGAAACAGTATGAGAGAACTCTTGATTTGTTCTCGAATTTTGTGGAGTCTGGTATTCGACCCAATACTTTCTCCTACGATAAAGCTGTTGAGGCGGCGGTGATGCTGAAGAACTTAAAAAGGGGTTTCGAATTGATGAATGCCATGGAGAAGGGAGGAGTGAGCCCATCTGTATTTATGTATAACGCGGTGATAGGCGGTTTGTGTAGAGTGGGGAGAATCAGAGATGCTCACAACCTATTTGATGAAATGATTAAGAGAAAGCTGGTTCCCAATTTGGTTACTTATAATACGCTGATTGATGGATGCTGTAAGGCTGGAGAAACAGAGAGAGCTTTGACTTTGAGAAAGGAGATGATGGCGGAAAATGTGGAGCCTAATCTTGTCACATACAATTCTTTGTTAAGTGGTCTTTGTCATTCACAGAGAATGGCAGAAGCGAGGACGTTGTTGCTTGAGATGGAGGCAAATGGGTTTTTGCCTGATGGATTTACTAGTATTATATTTGATGATCTTTCAAGATGTGGAAATGATAATGCTTCATTGGACAAAAGAGGAACGATCGATGAGTATTCTTGTAGTATATTGCTGAATGGATTATGCAAAGTGGGGATGCTTGAAAAAGCCAAGGAGGTTTTGGCCAGACTGACAGAGAGTGGATTTATACCGAGTAAGATAGTATATAACGTATTAGTGAATGCACATTGCCAAGAGGGTGACATAAAGAGAGCCATACTGACAATGGAACAAATGGAAGAACGTGGGTTGAAGGCTAGCTGTGTGACTTTCAATACCCTCATTAACAAGTTCTTTGAAACAAAGGATGTGCACCAGGTAGAAAGATGGTTAAAGAAGATGGCAGAGAAGGGTGTTTCCCCCAGTCTGGAGACTTACAACATTTTAATTAAGGGTTACGCCTGCATGAGTCAATTTGACAAGTGTTTCCTGATTCTCGAGGAAATGGAAAAAACAGGGATACAGCCAAATGTCTTAAGCTATGGTCTTCTGGTAAATTATCTATGCAAAGAAGGTAAGCGTCTCGAAGCTAAACTGATCTTTGAGGATATGACAAACCGAGGGGTTTCTCCAAACGCAGAAATATATAATATGCTCATTGATGGTAGTTGCTCTATGGGTAAACTGGAAGACGCCTTCAGATATTTTGATGAAATGGTTAAAAATGGAACAGGACCAACTGTTGTAACATACAATACGCTCATATATGGACTCGGAAAAGATGGAAGGATAACGGAAGCTGAGGAATTTTTTCAACAAATGGCTAGCAATGGATACAATCCAGATGTAATCACATACAATTCACTGATCGCAGGATATGCGAGGTCAGGAAACACCCAGAAATGCCTCGAGTTGTATGATAATATGAAGAAACTAGGCATAAAACCTACTGTTAGGACGTTTCATCCTTTGATCAATGCATGCAGCAAGGAAGGGGTGGTGACAGTGGAGAGGCTGTTTCAGGAAATGTTGGAAATGGATTTGGTTCCAGATCGAGTAGTGTATAATTTAATGATTTACGTTTACGCTGAAGAAGGAGACGTTGAAAAGGCAATATCTTTGCACCGACGTATGGTTGAACAGGGGATTCATTCGGACAAGGTAACTTATAACAACTTGATACTAGTATACCTTAGAGATGAAAGGGTGTCAGAAGTAAAACATCTTGTTGATGATATGAAAGTTAAAGGAGTGGTTCCAAAAGCTGATACATATGACCTACTGGTGAAGGGACATTGCGACTTAAAGGATTTCAATGGAGCGTATGATTGGTATAGGGAAACGTTTGAGAGAGGTTTTTCACTAAATGAACGCACATGCTATCAACTTATCTCCGGACTTAGTCAGAAGGGAATGCTACGAGAAGCTCAGATCGTCTCCTCGGAATTGAGTTGCAGAGGACAATAA | 2724 | 0.4156 | MIFWFSTLYSFEELQFEDMGKDHTNIFHFESPFCPSLSTLQMAQDKTCPSNRKRNQSHFLSREEISITYPSIYSPSIPLKQFTKPASQFLHRALKRRKEKMGRRDALVLLPNLQVTLRKEPRNSIFVPLSLSFCSEPVSETLDETQHTQISELPTDNNDRSDSQEQKRLERVRKFQKLLKEGRGYAAQRFIKSLVLSKTPFSSPFELLAYFSFSLPSLKPVFSNMLFRACSESEMVNEATELYSLMREDGVLPSSGSVNQLLKTLVTSKQYERTLDLFSNFVESGIRPNTFSYDKAVEAAVMLKNLKRGFELMNAMEKGGVSPSVFMYNAVIGGLCRVGRIRDAHNLFDEMIKRKLVPNLVTYNTLIDGCCKAGETERALTLRKEMMAENVEPNLVTYNSLLSGLCHSQRMAEARTLLLEMEANGFLPDGFTSIIFDDLSRCGNDNASLDKRGTIDEYSCSILLNGLCKVGMLEKAKEVLARLTESGFIPSKIVYNVLVNAHCQEGDIKRAILTMEQMEERGLKASCVTFNTLINKFFETKDVHQVERWLKKMAEKGVSPSLETYNILIKGYACMSQFDKCFLILEEMEKTGIQPNVLSYGLLVNYLCKEGKRLEAKLIFEDMTNRGVSPNAEIYNMLIDGSCSMGKLEDAFRYFDEMVKNGTGPTVVTYNTLIYGLGKDGRITEAEEFFQQMASNGYNPDVITYNSLIAGYARSGNTQKCLELYDNMKKLGIKPTVRTFHPLINACSKEGVVTVERLFQEMLEMDLVPDRVVYNLMIYVYAEEGDVEKAISLHRRMVEQGIHSDKVTYNNLILVYLRDERVSEVKHLVDDMKVKGVVPKADTYDLLVKGHCDLKDFNGAYDWYRETFERGFSLNERTCYQLISGLSQKGMLREAQIVSSELSCRGQ | 907 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 770 | 804 | IPR002885 | - | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 522 | 626 | IPR011990 | GO:0005515 | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 445 | 521 | IPR011990 | GO:0005515 | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 526 | 560 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | Pentatricopeptide repeat domain | 516 | 572 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 666 | 700 | IPR002885 | - | |
| Dere01g2753 | 907 | MobiDBLite | consensus disorder prediction | 144 | 167 | - | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 805 | 839 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 219 | 253 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 596 | 630 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 491 | 525 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 634 | 666 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 668 | 702 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 224 | 254 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 327 | 359 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 528 | 561 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 772 | 805 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 361 | 394 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 807 | 839 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 396 | 429 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 599 | 632 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 493 | 526 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 703 | 737 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 458 | 491 | IPR002885 | - | |
| Dere01g2753 | 907 | NCBIfam | pentatricopeptide repeat | 564 | 597 | IPR002885 | - | |
| Dere01g2753 | 907 | SUPERFAMILY | HCP-like | 495 | 735 | - | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 631 | 665 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat family | 805 | 852 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat family | 393 | 432 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat family | 700 | 748 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat family | 323 | 372 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat family | 630 | 677 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 701 | 735 | IPR002885 | - | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 456 | 490 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat | 599 | 628 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat | 772 | 802 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat | 459 | 488 | IPR002885 | - | |
| Dere01g2753 | 907 | Pfam | PPR repeat | 224 | 251 | IPR002885 | - | |
| Dere01g2753 | 907 | PANTHER | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE | 222 | 588 | - | - | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 754 | 906 | IPR011990 | GO:0005515 | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 221 | 356 | IPR011990 | GO:0005515 | |
| Dere01g2753 | 907 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 561 | 595 | IPR002885 | - | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 643 | 753 | IPR011990 | GO:0005515 | |
| Dere01g2753 | 907 | Gene3D | Tetratricopeptide repeat domain | 357 | 440 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g2753 | 459 | 906 | Glycosyltransferase | AT1G05670 | 28.731 | 2.35e-66 | 234 |