Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2748 ATGATCTTCTCTTCTCACGGGTGGACGCCTTCCTTTAAATATGATCAAGCTTCTATTGTCACCCATTACTCCTCTCTTACCACTACGAACAGCCTCACTTGTTACTGCAATAACGCCTCTAAATCTTCCATTCTTGCTGATATTGTTGATCTTCTGTCATTCGTCAGTTATGTACTCTACAAATATTGGGAGCCTCTGAGTGATGGACTTTGTGGATACATTCATCACAGTGTTGAGGTGAAAAATGGAGAATCTGTTAAGGTTATTCCTGGAGAAGACAAGATCTTGCATCTTTCACAGGCATGTCTGGGAATCAAGAAGGAGAAAGAAAGTGAACCAGTCTGCCTGTTTGTAAAATTTGGTGATCAGAAACTTGTGATTGGAATTCTTTCTTCTGAAAAATTTCCTCAGATATCCTTTGATTTGGTGTTTGAGAAGGAGTTTGAGCTCTCCCAAAACTGGAAACATGGGAGTGTCTTCTTTACTGGATATAGGGCGAGGAATTATGAAGATGATGATATTCCAGTTAGTGCTGCCAACGGCAAACCAGAGTCTGAAGCAAAGAAAGCTGTCAAACTTGATGCAACTGAAGCTGTCCTGACGGGAAAGATAGAGGGTACAAGGAAAGATGAGAAGGCCAATCAAAAGGATGATAATGGTGAAGATGAGGAAGATTCATCAGAATCTGATGAGTTGGTTCAGGATTCTGGTGAAGATGAGCCCAAGGTGAATGCTGGTGAGGCAGGAAGTACTGAGGGTGAAGATGATTGTGATGAAAGTGATGAGGATGACGATGACGAAAATGAGGATGAAGAGACACCCAAGAAGGCCAAAGCTGGCGTCAAGAGGCCCGCAGAATCTACTGAGAAAACACCTGTTCCAGAGAAGAAGGCAAAATTAGTCACCCCGCACAAGAATGATGGCAAGAAAAGTGGCCATGTCCACATTGCGACTCCTCATCCTTCTAAACATGCTGCTGGGAAGGCAACTGCGACTAACTCGGTGCAGGCGAAGCAGCATACTCCCAAGTTGACCGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACGGATGACGCATTGCAATCGCATAATAGGGCTAAGCACAGTGCTAAGTGA 1125 0.44 MIFSSHGWTPSFKYDQASIVTHYSSLTTTNSLTCYCNNASKSSILADIVDLLSFVSYVLYKYWEPLSDGLCGYIHHSVEVKNGESVKVIPGEDKILHLSQACLGIKKEKESEPVCLFVKFGDQKLVIGILSSEKFPQISFDLVFEKEFELSQNWKHGSVFFTGYRARNYEDDDIPVSAANGKPESEAKKAVKLDATEAVLTGKIEGTRKDEKANQKDDNGEDEEDSSESDELVQDSGEDEPKVNAGEAGSTEGEDDCDESDEDDDDENEDEETPKKAKAGVKRPAESTEKTPVPEKKAKLVTPHKNDGKKSGHVHIATPHPSKHAAGKATATNSVQAKQHTPKLTGDYSCKPCNRSFKTDDALQSHNRAKHSAK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2748 374 ProSitePatterns Zinc finger C2H2 type domain signature. 350 371 IPR013087 -
Dere01g2748 374 FunFam Histone deacetylase HDT1 74 170 - -
Dere01g2748 374 MobiDBLite consensus disorder prediction 217 235 - -
Dere01g2748 374 Pfam Nucleoplasmin-like domain 77 164 IPR041232 -
Dere01g2748 374 MobiDBLite consensus disorder prediction 327 343 - -
Dere01g2748 374 MobiDBLite consensus disorder prediction 271 314 - -
Dere01g2748 374 Gene3D Nucleoplasmin core domain 74 171 - -
Dere01g2748 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 348 374 IPR013087 -
Dere01g2748 374 MobiDBLite consensus disorder prediction 251 270 - -
Dere01g2748 374 MobiDBLite consensus disorder prediction 202 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2748 Dere-ChrDere01 42350571 42353840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2748 78 373 C2H2 Transcription Factor Family AT5G03740 41.883 9.61e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2748 NPL 2e-08 CL0055