Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2742 ATGTGGACCCCGCTCTCCCGTGTGAGGAACCAAGCAAGCCTTGTAGCCTTGAACGTATCATCGGCAAACGAACGTAACTACCAGGAAACTACCTCAAAGTGTTTGGCCCCCACTAGTAACATGAACCCAAAAGACGAAGATCAACCAAAATCTCCGACAAGGTCTTCTGCTTTGGCTACGGAGTCGAAGGGTAAAGCTCCAGCCGAAACGTCTTCTTCGGACCGTTTGGATCAGGGAGCATGTGGGTTCTCTCCTATCGAATTGGGTCCTGAAGCATTCGGAGATACCTCGGCTAGTCCTTCCATGGCGGACATTGGCCTCTCTGGCCCTCTTCCTTCGTCTCTATATGATTCTCCTTTCATGGAGTTTGAAGCATTTGCAACTATGAACCCGACGTCTCTGGCTTCTTCTCCTCCCACTGTTCGTGATGACAGAGCTCCTTCGTTACCACCATCTACTGGGGAGGAGACTGGATTAATAGGGACAAGCGGTGATTTGGAGGACGTTGATATGCCACAGCCGCTTGACTGTTTGCACGGGAATCCAGTTCCGCCATTTCTATGGAAAACTTACGATCTGGTGGATGATCCATCGCTGGATCCGATCATATCGTGGGGCTCGACCGGTGCTAGCTTCGTGGTATGGGACCCTGTGGAATTTGCGAGGAACATCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTCCGCCAGCTAAATACTTATGGGTTCCGCAAGATTGACACTGATAAGTGGGAGTTTGCCAATGAAGGTTTCAAGCAAGGGAAAAGACATCTATTGAAGAACATACAAAGGCGCAGGTCACTTCAATCCCAGCATGTTGGTAGCTATTTTGGGCCATCTACTGAAGCAGGAAAGTCTGGAGTTGAGGTTGAGATTGAAAGACTGAGAAAGGAGAGAAGCGTGTTAATCCAAGATGTGGTTGATTTGCAGCAACAACAGCGTAGGACTGTTCATCATGCTGGACAAGTGAACCAGAGGCTTCAGTCTGCGGAGCAGAGACAGAAACAAATGGTCTCTTTCTTGGCTAAGTTATTTCAAAACCCAGCCTTTTTAGTCCGCCTTAAGCAAAAGAAGGAACAGACTGGTATAGATTCCCCAAGAGTGAGAAGAAAGTTTGTCAAGCAGCACCAACGTGAAACAGGAACATCAGACCCTTTGAAGGAAGAACAGATTGTAAAATACCAACCTGATTGGAGAAACATTACCAACCCTTCTGAAACATCGGGACTAAATCCAATTTCTATTGAACAGTCTCCTGACTACCTTTCCCAGGGTTTGGCAGGAGAACTTAGTTCAGTAGCAGAAAATCTGAATTTGCATGTGGAGGATGCCGTATCGAATGATTTAGCGGCTGCGCATGATATTATGGCAACTCCAGAGAACATAGGAAAGGGATTATCAAGCTTAGGACTTGAAAACCCCCTTTTCAAAGGGAAAAACGTCATGAGCCCAGATCGAGAAGTTGCCCCAGAGTACTTTGTCTCTTTCCCAGAGGATCTGACCAAGGAGAAAAGCTTTTCCATTTTTTACCCTCCTGAAACTGAAAGCATAATTAAACAAGAAGATATATGGAACCCTGGCTTTAATGTTAATGTTGCTACTTCTAGCTCTGGGAATGAAATGTGGGGCAATCCAATCAATTATGAAGTGCCAGAGTTTGGAGTGACTGGTGGTATGTCAGACCTCTGGGATTTAAGCTATATGCAAGAAACAGGAAATTTGGGTATTGATATGTGGCCAACTGATGAATTCCCTCCAAATGAAGTAGAAAGTCAAGCTGATCGTCCAAAAGATGATGGATCTAAGAATGTCAACCCATAG 1851 0.456 MWTPLSRVRNQASLVALNVSSANERNYQETTSKCLAPTSNMNPKDEDQPKSPTRSSALATESKGKAPAETSSSDRLDQGACGFSPIELGPEAFGDTSASPSMADIGLSGPLPSSLYDSPFMEFEAFATMNPTSLASSPPTVRDDRAPSLPPSTGEETGLIGTSGDLEDVDMPQPLDCLHGNPVPPFLWKTYDLVDDPSLDPIISWGSTGASFVVWDPVEFARNILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEGFKQGKRHLLKNIQRRRSLQSQHVGSYFGPSTEAGKSGVEVEIERLRKERSVLIQDVVDLQQQQRRTVHHAGQVNQRLQSAEQRQKQMVSFLAKLFQNPAFLVRLKQKKEQTGIDSPRVRRKFVKQHQRETGTSDPLKEEQIVKYQPDWRNITNPSETSGLNPISIEQSPDYLSQGLAGELSSVAENLNLHVEDAVSNDLAAAHDIMATPENIGKGLSSLGLENPLFKGKNVMSPDREVAPEYFVSFPEDLTKEKSFSIFYPPETESIIKQEDIWNPGFNVNVATSSSGNEMWGNPINYEVPEFGVTGGMSDLWDLSYMQETGNLGIDMWPTDEFPPNEVESQADRPKDDGSKNVNP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2742 616 Coils Coil 302 322 - -
Dere01g2742 616 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 172 397 IPR027725 -
Dere01g2742 616 MobiDBLite consensus disorder prediction 598 616 - -
Dere01g2742 616 Gene3D - 178 276 IPR036388 -
Dere01g2742 616 MobiDBLite consensus disorder prediction 18 101 - -
Dere01g2742 616 Pfam HSF-type DNA-binding 186 275 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 FunFam Heat shock transcription factor 1 179 276 - -
Dere01g2742 616 PRINTS Heat shock factor (HSF) domain signature 186 209 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 PRINTS Heat shock factor (HSF) domain signature 237 249 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 PRINTS Heat shock factor (HSF) domain signature 224 236 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 MobiDBLite consensus disorder prediction 18 78 - -
Dere01g2742 616 SMART hsfneu3 182 275 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 SUPERFAMILY "Winged helix" DNA-binding domain 181 275 IPR036390 -
Dere01g2742 616 ProSitePatterns HSF-type DNA-binding domain signature. 225 249 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2742 616 MobiDBLite consensus disorder prediction 134 162 - -
Dere01g2742 616 MobiDBLite consensus disorder prediction 588 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2742 Dere-ChrDere01 42231609 42234685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2742 129 591 HSF AT5G03720 43.841 1.85e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere01g2742 HSF_DNA-bind 3.8e-31 CL0123