Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2740 ATGGATAGCTCAAGTAGATCGTTCGAAAGATCGAGAGAGCCAGGTATCAAGAAACCCCGACTGACCGACGAGCTCGAGCGCGGCTCAAATTCCAGTGTCCGACCGTCTCAGCGACAAGTGGCTCCTGGGGTTAATTCGTTGGCCTCTGCAAGGTTTCGGACAAACGACAGAGATTCGGAAAGCAGTGACTCGGGTCGCGGTGGATACCAGCCTCAACCGCTCCACCATGAGCTTGTAACTCAGTATAAAACCGCGCTTGCTGAGCTGACTTTCAATTCTAAACCGATAATTACCAACTTGACTATAATTGCAGGCGAGAGTCTTCATGCTGCTAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTACTGAACAAAAGCTGCCATCTCTTTATCTTTTGGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATATAGACAGGTTGATCCTTCTGTTCATTCCAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTTTTTCCTCTTCAGACCCTCCAGATGATTGAGAAAGAACTCAGCTTCACCCCCGCTGTCAATGGTTCATCTTCTACACTCAGGAGTGATTCACAGTCACACCGACCGCAGCATAGTATCCATGTGAATCCTAAATATTTAGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGACCAAAGGAACAGCTAATGATATGGCTGGAGCTATTGCAAACTCAACTGACAGTGCAGAAAGGCCAGATAGAGCATTGAGTGCTGCACGTCCATGGGTGGATTCCAGTGTTAACATGCAAAACATTCAGCGCTCTAATATAGATGCATACAACAATTCTGTTCCTGAAAAGGGCATTGGCACATCCTATGGAGGCAATGAATACAGTTCTGATCTTTCAAAGAATTCAGGCTTGGGTATTGGAAGAACTGGTGGTAGGGTCTCCGAGGTAGCACGTGACAAAGCTTGGTTTAAAGCAGGCAGTAGTGCTGCTGAGATGATGTCGGGCCAAAGAAATGGTTTCAGTCTCAAGCGTGTTTTATCAAATCATGAACCACCGAAGTCTATGAATTTAGATGAACGCAACCCATCAACACAGAGCTTAACTAGCATAAAAAGCAGTGTGTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGACTGAGCGTGGTGCATCCAATACCTCTAATAACTTGAACAAAGATCAGTGGACTGGTGATGATGACAATTTGGCAGTTGAAGATCACCTTCAAATCACGTTTCCTGTAGATAGGGAAGTATCCACTGAAATGAAACAGCTACCTGCTTTGGGTCATCGGCCATCATTATCATGGCAATTGCAGGAGCAGCACTCATTTGATGAGCTGAATCGTAAACCACGTCCTTCAGAAGGTTTTGCATCTGCTCTTGGTAAGTTACCAACCAGTGCAAATTCTTCTGCTGTCAAGATGGGAAATCAACCTTTCCTGTCAAAAGCAACAACAGGATCAGTAGGAATGGTGCGACAACAGCAGTTTCAGTCTGTAGGAGCAGAGTCTCCAATGCAATCACCTCTGCGACAACAGTCGCCATCACAACCAGTTAATGTGCGTCATCCTCCTCATCAATTGCGAAATTTGGCTGAGCTAGACTGTTCACAGACTCCGAAAATGTCTCAATTCTCAGTTGTACAGAGCCAAGATATTCAAGATTCTTCGCCTGTCCTTCCACATACCATTCAGTTTGGTAACCCACGAAGATCACAGCAAAATGACTTGCGAGGTTCATCATCTTCTGGGTCTACTTTTCAGCCAAGACATCATAATGCAGCATCACAGCAGCATCAACTTGGTTCTTCTCAGACTGAAGCCTCTGATTTGGCTGAAAAGACACCTCACTCTAAATTATCTATAGCTTCAGAGCAGTCAACCACAAGTAATTTGTTTGCTGCAGTTATGAAGAGTGGAATTTTCACCAACAATTCATTATCCAATAGTCGGCCTATTGCAAGTTTCTTGGATAGAAGGAACCTGCCATCAAAATTGGGGGTTCAGCCTTGTCAGCCAAGTGGATATTCTCCTACCACATCAATTTCTTCAGGGCCTGGGGTTGCATCACCATCTTCATTAGGTCCTTCTCCCAATGATGACTCATCTTCTCTGCCAAAAGCATCTGAAGGAAAGGTTAAAACTCCACCAAGGGTCCCTGCTCTGCCACCAGCTTCCTCTCCTGTGAGTAGTGCCTCAGCCAATACTGAGAATGCCACCAATAATAAACCTAATCCAGTTTCAAACCTTTTAAGTTCATTAGTTGCAAAGGGTTTGATTTCGGCAAAAACAGATTCACCGGCTAAGGTGCCAGCTGGGGTGCTGATCCGATCAGAAGATGAAAGCCAAAGCATTACCACCAATAGCACTTTGCCAGTTGCTTCAGTTTCTGGTGCTGCAGCTGTCCCTGTACCATCTACCAGAGATGATCAACATGCAAAAACCACAGAAATAAAAAATATTATTGGCTTTGAGTTTAAGCCCAATGTAATCCGAGAATTGCATATACCTGTGATCAGAGAACTATTGGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAGGCTTAAACATCAAGAACAGTTTAATAGACACTCAGAGTGGCATGCTACAAGAGAAAGAGTAAAAAAGGATGTAATGAAGGCCTCGAGAAGATGGTATTTAAGGTCAACTGACTGGATTGTTGGCAAGGATGAAGTTTCATGTGAGTGTGAGTATATTGATTCTGTAGATTCACATAGCAATAAATCAGACAATGGTGAAGTGAATATTATGATTCCATCAGACGAAGACCAGTGCTTGTGCGTGTTGTGTGGTGAGCTATTTGAAGATGTTTACTGCCTAGAAAGGGATGAGTGGATGTTCAAAGGGGCTGTCTACATGTCTTTATCGGATAGTGATGGTGAGATGTGTATTAATGTCAATACTGCAAGGGGTCCCATAGTTCATGCAAGGTGCTTATCAGAGAGCTCCATATCCAATGCCACTACAAAGGAACAGGATTGA 3108 0.4411 MDSSSRSFERSREPGIKKPRLTDELERGSNSSVRPSQRQVAPGVNSLASARFRTNDRDSESSDSGRGGYQPQPLHHELVTQYKTALAELTFNSKPIITNLTIIAGESLHAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHSSMRHLFGTWKGVFPLQTLQMIEKELSFTPAVNGSSSTLRSDSQSHRPQHSIHVNPKYLERQRLQQSGRTKGTANDMAGAIANSTDSAERPDRALSAARPWVDSSVNMQNIQRSNIDAYNNSVPEKGIGTSYGGNEYSSDLSKNSGLGIGRTGGRVSEVARDKAWFKAGSSAAEMMSGQRNGFSLKRVLSNHEPPKSMNLDERNPSTQSLTSIKSSVLSSSWKNSEEEEYMWDEVNAGLTERGASNTSNNLNKDQWTGDDDNLAVEDHLQITFPVDREVSTEMKQLPALGHRPSLSWQLQEQHSFDELNRKPRPSEGFASALGKLPTSANSSAVKMGNQPFLSKATTGSVGMVRQQQFQSVGAESPMQSPLRQQSPSQPVNVRHPPHQLRNLAELDCSQTPKMSQFSVVQSQDIQDSSPVLPHTIQFGNPRRSQQNDLRGSSSSGSTFQPRHHNAASQQHQLGSSQTEASDLAEKTPHSKLSIASEQSTTSNLFAAVMKSGIFTNNSLSNSRPIASFLDRRNLPSKLGVQPCQPSGYSPTTSISSGPGVASPSSLGPSPNDDSSSLPKASEGKVKTPPRVPALPPASSPVSSASANTENATNNKPNPVSNLLSSLVAKGLISAKTDSPAKVPAGVLIRSEDESQSITTNSTLPVASVSGAAAVPVPSTRDDQHAKTTEIKNIIGFEFKPNVIRELHIPVIRELLDDFPHHCSICGLRLKHQEQFNRHSEWHATRERVKKDVMKASRRWYLRSTDWIVGKDEVSCECEYIDSVDSHSNKSDNGEVNIMIPSDEDQCLCVLCGELFEDVYCLERDEWMFKGAVYMSLSDSDGEMCINVNTARGPIVHARCLSESSISNATTKEQD 1035
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2740 1035 MobiDBLite consensus disorder prediction 205 223 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 698 779 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 1 27 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 759 779 - -
Dere01g2740 1035 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Dere01g2740 1035 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 575 660 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 700 742 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 1 73 - -
Dere01g2740 1035 SMART 558neu5 77 199 IPR006569 -
Dere01g2740 1035 Gene3D - 71 199 IPR008942 -
Dere01g2740 1035 ProSitePatterns Zinc finger C2H2 type domain signature. 883 903 IPR013087 -
Dere01g2740 1035 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 362 384 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 28 52 - -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 205 232 - -
Dere01g2740 1035 CDD CID_Pcf11 79 191 IPR047415 -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 530 556 - -
Dere01g2740 1035 Pfam CID domain 83 192 IPR006569 -
Dere01g2740 1035 MobiDBLite consensus disorder prediction 575 644 - -
Dere01g2740 1035 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 51 1028 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere01g2740 Dere-ChrDere01 42186869 42194177 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2740 73 411 C2H2 Transcription Factor Family AT4G04885 38.462 2.98e-54 201
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2740 01 42186869 42194177 Dere01g2740 01 42186869 42194177 ECH