Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2734 ATGGAAATGGAGGATCATCACAACAATCACCATCTTCCGCAGCAGTATGGCATGGCGGATCTCAGGCAGCTCATGAATGGAGGACCCAGGTCGACGGCGACACATTTCCCCTCAATACCACCGCAGCCCACGGCGGAGCTCTTCCAGGCTCACCGGAATCTGACGCCCACCCACCATCCACACTACGACATGATGATGTTTGGTCGTCATGTGGCTGATGTAATGCCTCGTGCCCTCCACGACTTTGCCTCCGATTCCCCCACCACCGCCGCTCCACCCACCAATAATATTACTGTGGCCACTCCCGCTACCACAGCCAGCGCTTCCACTCCTCCGGTAAGTGGCTTAGAAGCTGAGACCCCAGGCTGCCTCGCTGGGGATGCCTCCACCGGAAGATGGCCCAGGCAGGAAACACTCACTCTCCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCCAATCAGAAGGGCCCCTTATGGGATGAAGTCTCCAGGATCATGTCGGAAGAACACGGATACCAAAGGAGTGGGAAAAAATGCAGGGAAAAATTCGAGAACTTATACAAATACTACAAGAAGACAAAGGAAGGGAAGGCGAGGAGACAGGATGGGAAGCATTATAGGTTCTTCCGTCAACTGGAAGCCTTATGTGGAGGAAATGGCAACTCAACCTCAGTACCAGAAACCAATTATGGAAGCTGCGGAATTCGTTTTCAGACACCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAATCACAAGAACTGTGATAGCCTCAGCCTTACAAACTCCTCCGATTTTGACACGTCATCCTCGGATGACAACAATCTCTGCAGCATGGAGAATGAGTCCACGGAGAAGGGGAGGAAGAGGAGGAGTGGAAGCAGCTGGAAGGCAAAAATAAGCGAGTTCATTGACTCACAGATGAGGAAGCTGATTGAGAAGCAAGAAGCTTGGATGGATAGGCTCGTGAAGACGCTTGAACAGAAGGAGAAGGAGAGGGTTTTAAGAGAGGAAGAATGGAGAAAACAAGAGGCAGCAAGATTGGAAAGGGAGCACAAGTTTTGGGCTAAAGAGAGAGCGTGGATTGAAGCAAGGGATGCTGCTCTAATGGACGCCTTGCAGAAACTAACAGGAAGAGAGGTAAAGGTTCAGTCTCCTGAAGATCAAGCTCTAGTTATGGCTAATGAAATTCAGAATCATGGAGAGAACCAGAATGAAGATGGAAGTGAGATACTCAATGGCAGTGTTAGAGGTGGTGACAACTGGGCTAAGAGTGAGATTACGAGGCTTGTAGAATTGAGGGCTGAGATGGAGTCCGGGTTTCAGCAAGGCGGGTGCTCGGAAGAGGTTATGTGGGAGGAAATAGCAAACAAAATGGCTTGTTTTGGCTACGAAAGGACTGCTTTGATGTGCAAACACAAGTGGGAAAGCATAACCAACTATTCAAGTGCCAAGGAAGGAAACAAGAAGCGCAAGGAAAAGTCTAGAAGCTGTTTTTACTTCGACAACAACATTAATGACCAATCTTCCTTGTATAATCAAGGAACTGCTCCCTATTGTGATATCAGCGATCAACGGCATGACACTGAGAGGCTACAAACAAACGATGGCTCTTCACCTTCAAATTCCAATGCTGTTGCCGCTGACGTCAGCTGCTTTCCCTTCTTTATTAGCACCGAGGGAGAAAATTTGTGGGATAACTACGGCTTGAAGATCAACAAAGGAAACCAAAACCATCTAATCTTGGTGTTGCATCATAAGGCTGGTGGTACCTCACGTACACATACGCATACACGAACAGGCAGTGTCCGTACTGGGGAAAGTGTAAAGAAGTTTCCTGCTAAAAGTGTTGGATTACACTGTGTTTGGGGAGACATGGCAGTCAATATGGTCACAGCCTTGGTGGGTGGCTTCAGCTTTTCTTTTGCTCCACTGGAACCCAGTTTGCTTGTCCCAACGCCTAAAGGCAGTTATGTAATTGGCAGTCAAAGCATACGAAATTGGGTTTGCAATAATGGAAGGGGATCAGAAGATTAG 2049 0.4812 MEMEDHHNNHHLPQQYGMADLRQLMNGGPRSTATHFPSIPPQPTAELFQAHRNLTPTHHPHYDMMMFGRHVADVMPRALHDFASDSPTTAAPPTNNITVATPATTASASTPPVSGLEAETPGCLAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALCGGNGNSTSVPETNYGSCGIRFQTPSQTNQDMFQSHNHKNCDSLSLTNSSDFDTSSSDDNNLCSMENESTEKGRKRRSGSSWKAKISEFIDSQMRKLIEKQEAWMDRLVKTLEQKEKERVLREEEWRKQEAARLEREHKFWAKERAWIEARDAALMDALQKLTGREVKVQSPEDQALVMANEIQNHGENQNEDGSEILNGSVRGGDNWAKSEITRLVELRAEMESGFQQGGCSEEVMWEEIANKMACFGYERTALMCKHKWESITNYSSAKEGNKKRKEKSRSCFYFDNNINDQSSLYNQGTAPYCDISDQRHDTERLQTNDGSSPSNSNAVAADVSCFPFFISTEGENLWDNYGLKINKGNQNHLILVLHHKAGGTSRTHTHTRTGSVRTGESVKKFPAKSVGLHCVWGDMAVNMVTALVGGFSFSFAPLEPSLLVPTPKGSYVIGSQSIRNWVCNNGRGSED 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2734 682 Gene3D - 133 195 - -
Dere01g2734 682 Gene3D - 426 486 - -
Dere01g2734 682 PANTHER FI21293P1 97 552 - -
Dere01g2734 682 CDD GT1 132 197 - -
Dere01g2734 682 Pfam Myb/SANT-like DNA-binding domain 424 506 IPR044822 -
Dere01g2734 682 Pfam Myb/SANT-like DNA-binding domain 132 218 IPR044822 -
Dere01g2734 682 ProSiteProfiles Myb-like domain profile. 125 190 IPR001005 -
Dere01g2734 682 FunFam trihelix transcription factor PTL-like 133 195 - -
Dere01g2734 682 MobiDBLite consensus disorder prediction 268 297 - -
Dere01g2734 682 CDD GT1 425 485 - -
Dere01g2734 682 MobiDBLite consensus disorder prediction 104 130 - -
Dere01g2734 682 ProSiteProfiles Myb-like domain profile. 425 483 IPR001005 -
Dere01g2734 682 SMART sant 129 192 IPR001005 -
Dere01g2734 682 SMART sant 422 485 IPR001005 -
Dere01g2734 682 MobiDBLite consensus disorder prediction 268 285 - -
Dere01g2734 682 FunFam Trihelix transcription factor GT-2 426 488 - -
Dere01g2734 682 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2734 Dere-ChrDere01 42154330 42159230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2734 15 578 Trihelix Transcription Factor Family AT5G03680 46.446 1.16e-147 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere01g2734 Myb_DNA-bind_4 6.9e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2734 01 42154330 42159230 Dere01g2734 01 42154330 42159230 ECH