Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2733 ATGCGTTCCAATACTCATTCTAGTTCCTCTAGCGCCGCCACCGGAGCTAGCAACGGTGGTGCAGCGACTGGGCGTCACCCGGTGTACCGGGGAGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCAGAAATTCGAGAGCCCAGGAAGCCCAATAGGATATGGTTAGGCACATTCCCTACCCCTGAAATGGCTGCGATTGCCTATGACGTGGCTGCCCTTGCCCTCAAAGGTAGGGATGCCGACCTCAACTTCCCTGACTCCGCTTCTTCCCTGCCCGTTCCTGCTTCTTCCTCTGCCCGTGATATTCAGGTGGCTGCAGCCAGTGCTGCTGCTGCTGCTGGAGCAGCCAGGGATGCTTTATCCGGAGGAACCCGAGAACAAAGGAATGTCAGTGTTGGTGGTGTTTCAGAGGGACAGCAGCAAGGGGTGGCTGGGTATGTGGATGAAGATTTGATCTTTGATTTACCCAATGTCCTCGTCAATATGGCCCAAGGAATGCTGCTTACCCCTCCTCCTTTGGACTTTGCTGGGGACGACGATGCCGCTGGTAATGATGATCAAAACCTCTGGAAATTTCCCTAA 582 0.5498 MRSNTHSSSSSAATGASNGGAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGRDADLNFPDSASSLPVPASSSARDIQVAAASAAAAAGAARDALSGGTREQRNVSVGGVSEGQQQGVAGYVDEDLIFDLPNVLVNMAQGMLLTPPPLDFAGDDDAAGNDDQNLWKFP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2733 193 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 191 IPR045277 GO:0003700
Dere01g2733 193 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Dere01g2733 193 MobiDBLite consensus disorder prediction 124 138 - -
Dere01g2733 193 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Dere01g2733 193 MobiDBLite consensus disorder prediction 1 43 - -
Dere01g2733 193 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Dere01g2733 193 MobiDBLite consensus disorder prediction 119 138 - -
Dere01g2733 193 MobiDBLite consensus disorder prediction 1 18 - -
Dere01g2733 193 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2733 Dere-ChrDere01 42135426 42136007 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2733 24 193 AP2-EREBP Transcription Factor Family AT2G36450 62.857 6.73e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g2733 AP2 5.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2733 01 42135426 42136007 Dere02g1141 02 10894222 10895372 CCT
Dere01g2733 01 42135426 42136007 Dere01g2733 01 42135426 42136007 ECH