Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2727 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAATCAGAAGAACAACATTCCGCAAAGATGCCAAAACTCCTGCTTGAATCCCATTTACACCCACCACATTCATCTCCCTCTTCCACTGCTCTCCCTTTCTTGGTACCTGAACTCAACACCAAAGTCAGCTCGCTCTCAGCATTTTCTGATTCCACATTAGCTACAACCAGATTTCCCAGGATGGGAAGTTATTTCAGCCTGGCTCAGTGGCAGGAGCTGGAGTTGCAGGCATTGATATTCAGGTACATGTTGGCGGGTGCTGCTGTTCCTCCGGAGCTTCTTCTGCCAATCAAGAAGAGTCTTCTTCATTCATCTCCTTATTTCCTTCATTATCAGCCTCCTTTGTTGCAATCGGGGTATTGGGGAGGAGCTGCCATGGATCCAGAGCCTGGCAGGTGTCGGAGGACGGACGGCAAAAAGTGGCGGTGCTCGAGAGACGTGGTGGCAGGCCAGAAGTACTGCGAGCGCCACATGCATCGAGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTGCCCACACCAACCACTGCCGGAGGCGTTGGCTCTGCCGGCGGCGGCGGGTGTCTCGGTGCTACAACGGCCTCCATATCTGCCCCGCATATGGCAAAAGCAACATTGAAATCCCCTTTCGATCTCCTTCAACTGAGTCAATGTTCATCGGAGACCAACAAGAATGAGAACAAGAGCCTATTTGAAAATCAAAATCAAGATAATGTGGATGGTGAAGGTAGATCGGATGGGCATATCCTGCGACATTTTTTCGATGATTGGCCTCGATCACTCCAGGAACCTGACAATGCCGAAAGCAACGCAAGCACTATCAGCTCAGCCACATGCCTCTCTATCTCAATGCCTGGAAATGCTTCGTCGGATGTGTCACTGAAATTGTCCACTGGCGGTGATGCAGAGGATCCTTGTCCAAGAAGTGGAAATGTAGGCCCACGGCATTTGCAGTTGAATTGGGCAGGAGGATGGACTTCTTCGGCTAATCAAGTGGCATCAATGGGAGGACCACTTGCAGAGGCTCTCAGATCATCTACTTCAACTTCATCACCCACCAGTGTTCTATATCAGTTACCTCGTAGTTCTGCCTCTGAAACCTGCTTCATTAGCACCTAG 1161 0.5022 MDFHLKQWRNQHESESEEQHSAKMPKLLLESHLHPPHSSPSSTALPFLVPELNTKVSSLSAFSDSTLATTRFPRMGSYFSLAQWQELELQALIFRYMLAGAAVPPELLLPIKKSLLHSSPYFLHYQPPLLQSGYWGGAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTAGGVGSAGGGGCLGATTASISAPHMAKATLKSPFDLLQLSQCSSETNKNENKSLFENQNQDNVDGEGRSDGHILRHFFDDWPRSLQEPDNAESNASTISSATCLSISMPGNASSDVSLKLSTGGDAEDPCPRSGNVGPRHLQLNWAGGWTSSANQVASMGGPLAEALRSSTSTSSPTSVLYQLPRSSASETCFIST 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2727 386 SMART QLQ_2 77 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere01g2727 386 MobiDBLite consensus disorder prediction 238 252 - -
Dere01g2727 386 MobiDBLite consensus disorder prediction 1 22 - -
Dere01g2727 386 MobiDBLite consensus disorder prediction 238 261 - -
Dere01g2727 386 Pfam WRC 142 184 IPR014977 -
Dere01g2727 386 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Dere01g2727 386 Pfam QLQ 79 111 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere01g2727 386 MobiDBLite consensus disorder prediction 175 196 - -
Dere01g2727 386 ProSiteProfiles QLQ domain profile. 78 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere01g2727 386 PANTHER GROWTH-REGULATING FACTOR 5 31 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2727 Dere-ChrDere01 42083242 42085329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2727 1 373 GRF Transcription Factor Family AT3G52910 51.414 6.65e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dere01g2727 WRC 2.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2727 01 42083242 42085329 Dere02g1147 02 10980709 10982561 CCT
Dere01g2727 01 42083242 42085329 Dere01g2727 01 42083242 42085329 ECH