Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2720 ATGAAGGCGATCGCTGTGTATTTGCTGGCCGTGTTGGGAGGCAACACTAGCCCTTCCGCTGGTGATATCAAGAACATCCTTGGCTCTGTTGGAGCAGAAGCTGATGATGATAAAATTGAACTTCTATTGTCTGAATTGAAAGGTCAAGATATAACGGAGGTTATTGCCAATGGAAGGGAAAAGTTGGCCTCAGTGCCTAGTGGTGGTGGTGCTGCAGTTGCCGTGGCTGCTGCTGCTCCAGCTGCAGCTGAGTCGAAGAAAGAGGAAAAGGTGGAGGAGAAAGAAGAATCTGACGAATCTCTCATCCATTCCCTCACTCACGCCCCAAAGCTCCTGCTCACTTCCCAAAATGTTGTCTTGGGTGTTTCGTGGAATCATTCCGCACAACACCACTGTGTTCCGTGGCGGCTAAGATCTTTGCCTTCGGAGTTGAGATGCGTGGAAATGAAATTGCCTAAGCCTGCTGATTGGACCTATCACAAGTTGGATTCGCTCATAGTCGGTAATCCATACATATGCAGTGTCATGGATTTAGAGTCTTTTCGGAAACTGGAGGCTGGTCTTGAGTCATGCATGAAGGGCAGCAATGCTGCAAATGTGGTTGATTCATCTGTCACTAAAGGTTATTATGGCACTTTACTCAGTTCAACTTATAATTAG 660 0.4697 MKAIAVYLLAVLGGNTSPSAGDIKNILGSVGAEADDDKIELLLSELKGQDITEVIANGREKLASVPSGGGAAVAVAAAAPAAAESKKEEKVEEKEESDESLIHSLTHAPKLLLTSQNVVLGVSWNHSAQHHCVPWRLRSLPSELRCVEMKLPKPADWTYHKLDSLIVGNPYICSVMDLESFRKLEAGLESCMKGSNAANVVDSSVTKGYYGTLLSSTYN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2720 219 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 105 IPR044076 GO:0002182|GO:0003735|GO:0022625
Dere01g2720 219 FunFam 60S acidic ribosomal protein P2 1 59 - -
Dere01g2720 219 Hamap 50S ribosomal protein L12 [rpl12]. 2 107 IPR027534 GO:0003735|GO:0005840|GO:0006414
Dere01g2720 219 Gene3D - 1 58 IPR038716 -
Dere01g2720 219 Pfam 60s Acidic ribosomal protein 17 100 - -
Dere01g2720 219 CDD Ribosomal_P2 1 70 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2720 Dere-ChrDere01 41993613 42001170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2720 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 70.000 2.00e-28 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2720 01 41993613 42001170 Dere01g2720 01 41993613 42001170 ECH