Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2709 ATGGCAGAAGAGCACCGATGCCAAGCACCCGAAGGCCACCGGCTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCCCAGCCACCATGAACCTCTGTTCAAAATGCTACAGAGACTTCTGTCTGAAGGAACAAGAGCAAGCTTCCACCAAATCAACCATCGAAGCCGCTCTCTCATCCTCTTCTGCATCTCCGCCTTCGCCGGCAGTGGAATCCCTCCCTCCTCCGCCGGCGTTGATACTACCAGAGGTGGCGGCAGACTCGCCGATCTCGGCATCGGTAACCGTCGAACCGGATCGGCCGGTGGCGCAACCGAACCGATGCGCGACGTGTCGTAAGAAGGTTGGGTTGACCGGGTTCAAGTGCAAGTGCGGTGTCATGTTTTGTGGGGTCCACAGGTATCCGGAGAAACACGGGTGCAGCTTCGACTTCAAGAAGGTGGGGCGAGAGGAAATAGGTCGAGCAAACCCCTTGATTAAAGCGGAGAAGCTGCAGAAGATTTAA 501 0.5689 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDFCLKEQEQASTKSTIEAALSSSSASPPSPAVESLPPPPALILPEVAADSPISASVTVEPDRPVAQPNRCATCRKKVGLTGFKCKCGVMFCGVHRYPEKHGCSFDFKKVGREEIGRANPLIKAEKLQKI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2709 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Dere01g2709 166 FunFam Zinc finger AN1-type containing 6 83 162 - -
Dere01g2709 166 Gene3D - 1 69 - -
Dere01g2709 166 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Dere01g2709 166 Gene3D - 84 162 IPR035896 -
Dere01g2709 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Dere01g2709 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Dere01g2709 166 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Dere01g2709 166 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Dere01g2709 166 MobiDBLite consensus disorder prediction 52 77 - -
Dere01g2709 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 166 - -
Dere01g2709 166 MobiDBLite consensus disorder prediction 52 66 - -
Dere01g2709 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Dere01g2709 166 SUPERFAMILY AN1-like Zinc finger 95 161 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2709 Dere-ChrDere01 41854805 41855305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2709 1 166 C2H2 Transcription Factor Family AT3G52800 61.176 8.36e-60 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2709 01 41854805 41855305 Dere02g1160 02 11137891 11138406 CCT
Dere01g2709 01 41854805 41855305 Dere01g2709 01 41854805 41855305 ECH