Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g2689 | ATGGACAGGAATGAAATGGGTAGACGACAATCTGATCTTGGCTTTCAGACCACCGATAAACCGCATCGGAGAATGGCCTTGAAGAGGCTCCTGAAACCCCTTGCAAAACCATTGCCCTCGTCATCCTCACCAGCCCTTTCTCCGATCCCCAACCCTCCTCTCCCTGCCCCACCTGATATTTCTCTTTCCCCACTTCCTACTCTTACTCTTTCTCCCAACTGCCACTATCATCGCCTCCTTCAGTTCGTAAAGACCCATCTCGCTCCTCCTTTCACGCCTGACAGCCTTCTCCACTTCCTCAAATCCAAGCTTCATCACCATCCTAGCTTCACCATCTATGACTTTCATATCTTCAATTGGGCCTCCACTATAGACTCCTTCCGTCACAACCACTCTACTTTTGAATGGATGGCTCGTACTCTCGCTATTACCAACCGTCTGGTCGAACTCCGAGCTCTTCTCCAATTCATGGCTTCCAATCCTTGCCCCTGCTCCGACGGTATTTTCTCTTGCTCTCGAACTGAACCCATATTCCGGTTTGCGATTAACGCTTTTTGTAAAGCTCGGAAATTGGATGATGCTGTGTTCGCTTTTGAGTGTATGCGGAGATTGATTGATGGGAGGCCTAATGTGGTGATTTGTAACTGTTTGATTCATGGTTTTGTAAAATGCGGAAGGCACGATAAAGCGTTGGAATTTTATGACAAAATGATTAAAGAAAGGGTCAAGCCTGATGTGTTTACTTTTAATATTTTGATCAGTAGCTATTGTCGAAATTCACAGTTTGGATTGGCTTTGGAGTTGTTTAAGGAGATGAGGGAAAAGGGATGCAATCCAAATGTGGTTACTTTTAATACTTTGATTAAGGGTCTCTTTAGGGAGCGGAAGATTCAAGAAGGGATTGAGATGGCCTACGAGATGATTGAATTGGGGTGTCAGCTCTCAAGTGTGACTTGTGAGATTTTAGTTGATGGACTTTGTAAGGAAGGTCAGGTTTTGCAAGCATGTGAGATATTAACAGACTTGTCCAGCAAGAGATTTTTGCCCTATGGATACGACTATTATGTTTTGGTGGAAACTCTATGTGGGAAAGGGAATGCTGTTAGAGCCCTGGAGCTCATTTATGAGCTATGGAACCTGGGAAATGCCCCAAGCTTGATAGCTTGTACTACACTAATTGACGGTTTAAGGAGCTTGGGGAAGACTGAAGAAGCATTAAAATTGTCCGAAAAGATGCTTAAAGAGGGTAAAGTTCCGGATATCGTGACATTTAATTCCGTTCTTCAGGATATATGTAATGTGCGAAGAACAGCAGATGCAAATAATTTGAGATTGCTGGCTTCAAGAAAGGGTTTGAAACCAGATGGCATGACCTATAGAATTTTGGTTACTGGGTACACGCGAGAGGGCAGTCAAAAGGAGGGAGAGTTAGTGGTAAATGAAATGTTGGATAGGGGATTTATACCTGATCTTGCTACTTATAACAAATTGATGAATGGTTTCTCTAATTGCCCACATTCTATGATCCAGAAAGCTAACGAAATTGGTCAGTGA | 1554 | 0.4344 | MDRNEMGRRQSDLGFQTTDKPHRRMALKRLLKPLAKPLPSSSSPALSPIPNPPLPAPPDISLSPLPTLTLSPNCHYHRLLQFVKTHLAPPFTPDSLLHFLKSKLHHHPSFTIYDFHIFNWASTIDSFRHNHSTFEWMARTLAITNRLVELRALLQFMASNPCPCSDGIFSCSRTEPIFRFAINAFCKARKLDDAVFAFECMRRLIDGRPNVVICNCLIHGFVKCGRHDKALEFYDKMIKERVKPDVFTFNILISSYCRNSQFGLALELFKEMREKGCNPNVVTFNTLIKGLFRERKIQEGIEMAYEMIELGCQLSSVTCEILVDGLCKEGQVLQACEILTDLSSKRFLPYGYDYYVLVETLCGKGNAVRALELIYELWNLGNAPSLIACTTLIDGLRSLGKTEEALKLSEKMLKEGKVPDIVTFNSVLQDICNVRRTADANNLRLLASRKGLKPDGMTYRILVTGYTREGSQKEGELVVNEMLDRGFIPDLATYNKLMNGFSNCPHSMIQKANEIGQ | 517 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 210 | 244 | IPR002885 | - | |
| Dere01g2689 | 517 | Pfam | Pentatricopeptide repeat domain | 448 | 501 | IPR002885 | - | |
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 245 | 279 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 247 | 281 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 317 | 349 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 282 | 315 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 212 | 246 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 388 | 421 | IPR002885 | - | |
| Dere01g2689 | 517 | NCBIfam | pentatricopeptide repeat | 458 | 490 | IPR002885 | - | |
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 385 | 419 | IPR002885 | - | |
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 455 | 489 | IPR002885 | - | |
| Dere01g2689 | 517 | Gene3D | Tetratricopeptide repeat domain | 235 | 351 | IPR011990 | GO:0005515 | |
| Dere01g2689 | 517 | SUPERFAMILY | HCP-like | 185 | 415 | - | - | |
| Dere01g2689 | 517 | Pfam | PPR repeat | 317 | 344 | IPR002885 | - | |
| Dere01g2689 | 517 | Pfam | PPR repeat | 182 | 203 | IPR002885 | - | |
| Dere01g2689 | 517 | Pfam | PPR repeat | 212 | 241 | IPR002885 | - | |
| Dere01g2689 | 517 | Gene3D | Tetratricopeptide repeat domain | 113 | 234 | IPR011990 | GO:0005515 | |
| Dere01g2689 | 517 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 94 | 396 | - | - | |
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 315 | 349 | IPR002885 | - | |
| Dere01g2689 | 517 | Gene3D | Tetratricopeptide repeat domain | 353 | 516 | IPR011990 | GO:0005515 | |
| Dere01g2689 | 517 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 280 | 314 | IPR002885 | - | |
| Dere01g2689 | 517 | Pfam | PPR repeat family | 384 | 433 | IPR002885 | - | |
| Dere01g2689 | 517 | Pfam | PPR repeat family | 244 | 292 | IPR002885 | - | |
| Dere01g2689 | 517 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g2689 | 181 | 515 | Glycosyltransferase | AT1G05670 | 27.083 | 2.36e-39 | 150 |