Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g2686 | ATGGATATATCAAATCCTGCAGTCTTTGTCAACGCCGAGCTGCTACGGTTATATGTTGGACGGAGGGTTCGGGCTGTTATACAGGTTGTTCGATCTGATGCTGGAGCTGTAATTGGAAAATCAACTGATGAGAAGCAGATAGTTGTAAAGGGCATGCCCCCACCGGGTCCTCTTACGAATTTTGTTGAAGTTATTGGCATAGCTGACAGTGATAAATCCATTCGTGCTGAGATATGGACCAATTTTGGCGATTCAATTGATACCTTCAGTTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTCAAACACCTATTCCTTTAA | 324 | 0.4228 | MDISNPAVFVNAELLRLYVGRRVRAVIQVVRSDAGAVIGKSTDEKQIVVKGMPPPGPLTNFVEVIGIADSDKSIRAEIWTNFGDSIDTFSYNKLCQLANGEFKHLFL | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g2686 | 107 | Gene3D | - | 3 | 107 | IPR012340 | - | |
| Dere01g2686 | 107 | CDD | RPA3 | 6 | 99 | - | - | |
| Dere01g2686 | 107 | PANTHER | REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED | 1 | 107 | - | - | |
| Dere01g2686 | 107 | SUPERFAMILY | Nucleic acid-binding proteins | 6 | 106 | IPR012340 | - | |
| Dere01g2686 | 107 | Pfam | Replication factor A protein 3 | 5 | 103 | IPR013970 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g2686 | Dere-ChrDere01 | 41675111 | 41676416 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g2686 | 1 | 107 | Core DNA Replication Machinery Family | AT4G18590 | 69.159 | 3.70e-54 | 162 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere01g2686 | 01 | 41675111 | 41676416 | Dere01g2686 | 01 | 41675111 | 41676416 | ECH |