Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2685 ATGAGACATGAACCGGATATAAATTTTTGCCAAACGGACGGAGGTTGTGCTTGTGTTTGGTTCCACAGGAATGCGAGGAAATTTCAAAATATAGAGACTGTAGATAAACATCAAAGAGTGGAGCTTCGTGCATTTCTAGTGGACAGAAAATGCATCGAAGATGAAATAGATTGTTTCTTACCTGTCTCACGAATGAATCGCTGTGAAACAAAGCGTCGAATTAGAGAGAAGAAACTTCCTTGCCGGAAATCAGTCAAATACACTGTTCGGAACAAATGTCATGCCGCGTATATTCTATTCGAGGGGCCTGCGCGAGCAATTTCATCGCCTCTTCACGAATACCTGGAACTGAACGTCACGGAGAAGCCTCGCGCGCTTGTTTCTTCCGAACGCATAAGGATGTTCCTCGTTCTTCCGAAACCTCCATCCCTATGTGCATCCCCATTCCATTCTTCAACTCACCTCCTAAAACTGAGACCCACACTCCCCATTTTCCCCACTCAACCGAACCCCAAACTCCCTCCTATTCGAGTTTCCCTCACAATCCTAAACTCCACCAAGCGTCCTTCCATTATTCCTTCAAACGGCAAAGCCTCCAATACTTTCTCACTTTCTCAGACTTTTCAATTCCTCAAACCTTGGCTTCTCTCTGAGCATAAGCCCATTCTCTTGGGGTGGCTCTGCAGCACCATATCTGTTTACTCCCTCTCCAAAATCGTTTCTAAAGTTGGGAAAGTTTCTTCTACAATCAACAGCATTGACGCGATCAAGTTGCGAGATGAAGGTTTAGTATTGGGGGGTTTGGTGATTGCTCGGTTGGTTGCGAGTTATGGGCAGCAGGCCTTTCTATGGGAAGCTGCACTGAACGCGGTATATAAGCTTAGGGTTCACGTTTTCGACAAAGTTTTGGAGAGAGACTTGGGATATTTCGAAGGCAAGGATGGTATTTCGGCCGGGGACGTTGCGTATCGGATCACTGCAGAAGCTTCGGATGTTGCTGATACTATATATGCTGTCCTTAACACAATAGTTCCCAGCACTCTACAGTTATCAGCAATGATGATGCAGATGTTGGTGATCAGTCCTGTCCTTTCTTTGATTTCAGCTGTGGTTATTCCTTGTATGGCGCTTGTTGTTGCTTTTCTTGGTCAGAAACTTCGTACCATATCTAGAAAGGCACATCTTAGCATTGCCAATCTCTCAGCGTATCTAAATGAGGTTCTCCCTGCAATTCTTTTTGTGAAAGCAAGCAATGCAGAACTGTGTGAGAGTGCCAGGTTTAAGAGGCTGGCTTGGATTGACTTTTTTGAACGCCTGAACAAGAAGAGGATGAAGGCAATCATTCCTCAAATTCTACAAGCTATTTATTTTGGAGTCTTATTTGTACTTTGCGCTGGCTCAGTAGTGGTTTCAAGAGGATCATTTGACGGCTATACCTTAGTTTCATTCGTGACATCATTGCTTTTCTTGATTGAACCAATCCAGGATGTGGGAAAAGCATACAATGAGTTGAAGCAGGGAGAACCAGCTGTTGAACGTTTGTTTGATCTGACCAGGTTCAAAGATAAGGTGGTTGAGAAACCAGATGCTGTTGATTTAGACTTTGTTAGAGGGGAGATAAAGTTTTGTAATGTCTCATTTAAGTATGGTGATGACATGTCACTCGTTATAAATGGACTAAATCTTCACATTGGAGCAGGAGAGATAGTTGCTCTTGTGGGTCCCTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTACTCCGTCTTTATGATCCAGTATCTGGCTGTATACTGATTGATAACCATGATATCCAAAGCATTCAGTTGCGGAGTTTGAGAGGACATGTTAGTCTTGTTTCTCAAGATATAACACTTTTTTCAGGAACAGTTGCTGAAAATATTGGTTATAAGGATCTGACAACAAAAATTGACATGGTGAGGGTTAAGCAAGCAGCACATACTGCTAATGCAGACGAATTTATTAGAAAACTTCCAGAAGGATACAAAACAAATATTGGACCAAGGGGCTCATTTTTAAGTGGAGGCCAAAGGCAAAGGCTAGCTATTGCCCGGGCTCTGTATGAGAATTCTTCTATATTAATACTGGATGAGGCAACTTCTGCTTTAGATAGTGAATCTGAGTTATTGGTCAGACAAGCTGTAAAGCGTTTGATGAAAAATCACACCGTGCTGGTTATTGCCCATCGTTTGGAAACGGTTCAGATGGCTAATCGAGTGTTCCTCTTGGATAAGGGTAAGCTAGAAGAGTTGCCTCGAACTATATTGAATGGTCACTGGGACTCATTGTTATCATCTGGGGTTGTCATATGA 2334 0.4289 MRHEPDINFCQTDGGCACVWFHRNARKFQNIETVDKHQRVELRAFLVDRKCIEDEIDCFLPVSRMNRCETKRRIREKKLPCRKSVKYTVRNKCHAAYILFEGPARAISSPLHEYLELNVTEKPRALVSSERIRMFLVLPKPPSLCASPFHSSTHLLKLRPTLPIFPTQPNPKLPPIRVSLTILNSTKRPSIIPSNGKASNTFSLSQTFQFLKPWLLSEHKPILLGWLCSTISVYSLSKIVSKVGKVSSTINSIDAIKLRDEGLVLGGLVIARLVASYGQQAFLWEAALNAVYKLRVHVFDKVLERDLGYFEGKDGISAGDVAYRITAEASDVADTIYAVLNTIVPSTLQLSAMMMQMLVISPVLSLISAVVIPCMALVVAFLGQKLRTISRKAHLSIANLSAYLNEVLPAILFVKASNAELCESARFKRLAWIDFFERLNKKRMKAIIPQILQAIYFGVLFVLCAGSVVVSRGSFDGYTLVSFVTSLLFLIEPIQDVGKAYNELKQGEPAVERLFDLTRFKDKVVEKPDAVDLDFVRGEIKFCNVSFKYGDDMSLVINGLNLHIGAGEIVALVGPSGGGKTTLVKLLLRLYDPVSGCILIDNHDIQSIQLRSLRGHVSLVSQDITLFSGTVAENIGYKDLTTKIDMVRVKQAAHTANADEFIRKLPEGYKTNIGPRGSFLSGGQRQRLAIARALYENSSILILDEATSALDSESELLVRQAVKRLMKNHTVLVIAHRLETVQMANRVFLLDKGKLEELPRTILNGHWDSLLSSGVVI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2685 777 FunFam ABC transporter related 209 520 - -
Dere01g2685 777 Gene3D ABC transporter type 1, transmembrane domain 194 519 IPR036640 GO:0005524|GO:0016020
Dere01g2685 777 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 223 506 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2685 777 SUPERFAMILY ABC transporter transmembrane region 212 519 IPR036640 GO:0005524|GO:0016020
Dere01g2685 777 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 540 777 IPR003439 GO:0005524
Dere01g2685 777 Pfam ABC transporter transmembrane region 262 493 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2685 777 CDD ABC_6TM_exporters 262 514 - -
Dere01g2685 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 758 IPR027417 -
Dere01g2685 777 ProSitePatterns ABC transporters family signature. 680 694 IPR017871 GO:0005524|GO:0016887
Dere01g2685 777 FunFam ABC transporter ATP-binding protein 533 773 - -
Dere01g2685 777 SMART AAA_5 566 754 IPR003593 GO:0016887
Dere01g2685 777 Gene3D - 530 773 IPR027417 -
Dere01g2685 777 Pfam ABC transporter 558 708 IPR003439 GO:0005524
Dere01g2685 777 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 217 757 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2685 Dere-ChrDere01 41668099 41674220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2685 263 774 Calmodulin-binding Proteins AT2G36910 32.015 1.52e-62 226