Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2663 ATGATGCGAATGGGTGATCACGTTGAAGCTTATATAGAGAGAATAAGCAGCTTTTGGATTAGTTTAATAGGGGAAGCGCCAAGGGGAGTTGTTAAGAAACCATTCCCACTTTTGATAGCAAAGCAAGTAGAGATCAGAGCATGCGACTTCCGACTACTTCGAGTTTGTGCCAAGCTCTTGGGAAGCTTTCTCCGACTCTGCAAAATGTGGGCAAGTGCAGAAGGTGCTGCTCCGGAGGTCACCCTGGAAACTTCTATGGGTTCTTTCACCGTTGAGCTGTACTACAAGCATGCACCCAGAACTTGCAGAAACTTCATTGAACTATCCCGCAGAGGTTATTACGATAACGTTAAATTCCACAGAATCATCAAGGACTTCATAGTACAAGGTGGAGATCCCACCGGAACAGGAAGGGGAGGAGAGTCCATTTATGGTCCAAAATTTGAAGATGAGATAAAAAAAGAGTTGAAGCACACTGGAGCTGGTATCTTATCCATGGCAAATGCTGGTCCAAATACTAATGGTAGTCAGTTCTTTATTACTTTGGCGCCATGCCCATCTCTGGATGGAAAACACACCATATTTGGAAGAGTATGTCAGGGGATGGAAATTATCAAGAGACTTGGCAGTGTACAAACTGATAACAATGATAGGCCCATCCATGATGTGAGGATACTGAGGACATCGGTCAAGGATTGA 699 0.4421 MMRMGDHVEAYIERISSFWISLIGEAPRGVVKKPFPLLIAKQVEIRACDFRLLRVCAKLLGSFLRLCKMWASAEGAAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGPKFEDEIKKELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCQGMEIIKRLGSVQTDNNDRPIHDVRILRTSVKD 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2663 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 189 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 93 108 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 Gene3D - 65 232 IPR029000 -
Dere01g2663 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 83 230 IPR002130 GO:0000413|GO:0003755
Dere01g2663 232 SUPERFAMILY Cyclophilin-like 79 230 IPR029000 -
Dere01g2663 232 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 114 131 IPR020892 GO:0003755|GO:0006457
Dere01g2663 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 77 229 IPR044666 -
Dere01g2663 232 FunFam Peptidyl-prolyl cis-trans isomerase 70 232 - -
Dere01g2663 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 80 229 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2663 Dere-ChrDere01 41468102 41474406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2663 80 230 U-box Gene Family AT5G67530 49.007 4.16e-49 167