Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2652 ATGCTTCTCTTGGGTGAGCAATTGCGAAAATGTGCAGAAAACTCTAGTCCAGGTTCAATACTCAATACAATACTCGAGCAGCAGCTAATGGAAGCAGAAGGAGGGAGGAGGAGTTGGGGTTCTGGAGAAGAGGAAAAGGAAGCGATGTTCGAGAAGGCGCTGACGCCGAGCGACGTGGGGAAACTGAACCGCCTGGTGATACCGAAGCAGCAGGCCGAGAAGTACTTCCCACTGGAGGGCGACAACAAGGGTGTGTTGCTAAGCTTCGAGGACGAGTCCGGCAAGTGCTGGCGCTTCCGCTACTCTTATTGGAACAGTAGCCAGAGCTACGTCCTTACCAAAGGCTGGAGCCGTTACGTCAAGGAGAAGCGCCTCGATGCCGGCGATGTCGTTTCCTTCCTCCGTCACCCCACAGATTCTCACCGCCTTTTCATCACCTGTAGGCGCCGCCACTCTCATGCCGCCCCCGCTCAAGTTAGCACCCCTATGCATATGGCCGTGCCAAATGATGCCAATAGCAGTGGTGCTGGTGTGGGTCTGGGTGTACCATGGACCACCACACCTTTCTATTTTGGGCATCCTTGTCCTATGGATCAGTACCCTTTGGCATACCAACCTCAAACTCTTCATGCACCAGGAAGAGGGTCCCCAGGTCAGAAGCGAAGGACGCCGGAAGGAAACAGCTCTAAGGTACTGAGACTATTCGGAGTAAACATGGAATGTCAAGCAGAAACAGATGAATCCGGACCCTCCACACCCCAATACTCTTCTTACGTGTCGTCATCATCTACCCATCACCACTTTTACCAAAATAATCATCCTCAGCCTTATGTATCCAATCCTCACCACCACATGGTAAGTCAACAGTCATACTTCTAA 879 0.521 MLLLGEQLRKCAENSSPGSILNTILEQQLMEAEGGRRSWGSGEEEKEAMFEKALTPSDVGKLNRLVIPKQQAEKYFPLEGDNKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVSFLRHPTDSHRLFITCRRRHSHAAPAQVSTPMHMAVPNDANSSGAGVGLGVPWTTTPFYFGHPCPMDQYPLAYQPQTLHAPGRGSPGQKRRTPEGNSSKVLRLFGVNMECQAETDESGPSTPQYSSYVSSSSTHHHFYQNNHPQPYVSNPHHHMVSQQSYF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2652 292 SMART B3_2 50 150 IPR003340 GO:0003677
Dere01g2652 292 ProSiteProfiles B3 DNA-binding domain profile. 50 151 IPR003340 GO:0003677
Dere01g2652 292 MobiDBLite consensus disorder prediction 244 292 - -
Dere01g2652 292 CDD B3_DNA 49 141 IPR003340 GO:0003677
Dere01g2652 292 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 252 IPR044800 GO:0003700
Dere01g2652 292 MobiDBLite consensus disorder prediction 242 292 - -
Dere01g2652 292 SUPERFAMILY DNA-binding pseudobarrel domain 47 151 IPR015300 -
Dere01g2652 292 MobiDBLite consensus disorder prediction 207 228 - -
Dere01g2652 292 Gene3D - 38 160 IPR015300 -
Dere01g2652 292 Pfam B3 DNA binding domain 50 150 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2652 Dere-ChrDere01 41376878 41378176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2652 43 252 RAV Transcription Factor Family AT5G06250 47.111 7.30e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere01g2652 B3 2.7e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2652 01 41376878 41378176 Dere02g1214 02 11659949 11661494 CCT
Dere01g2652 01 41376878 41378176 Dere01g2652 01 41376878 41378176 ECH