Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2648 ATGCTTATGGGTGGGCCTCGAATTATCTTTTTTTCGCTGTGGCAGGGGTATAGTGTTGTTGATCGGTGTTTCTTTGCCTCTCCGCAAAATCGGTGTCTCGTTCTTTCTCGGAGGCTCACCATGGGACGTGTCCGCACCAAAACTGTGAAGAAATCTTCACGCCAAGTCATAGAGAGGTATTACTCTCGAATGACACTGGATTTTCACACAAACAAGAAAATCCTGGAGGAGGTGGCTCTCATTCCCTCCAAGAGGCTCCGCAATAAGATTGCGGGATTTTCCACCCACCTCATGAAGAGGATCCAGAAGGGTCCTGTTCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAACGCAGAATGGATTTCGTGCCCGATGTTTCTGCGATCAAAACGGAGCAGATTGAGGTCGACAAGGAGACTCTTGATATGCTCAGCGCTCTTGGCATGAGCGAGATTCCCGGGCTTGTTCAAGTTGATCCTGTTCCTGTCCAGCAGTCACTTGGATTTGGTCGTGGTGGTTTTGGTGGACCCGGCAGGAGGTTCTGA 552 0.5127 MLMGGPRIIFFSLWQGYSVVDRCFFASPQNRCLVLSRRLTMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMSEIPGLVQVDPVPVQQSLGFGRGGFGGPGRRF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2648 183 Hamap 30S ribosomal protein S17e [rps17e]. 41 103 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 PANTHER 40S RIBOSOMAL PROTEIN S17 41 165 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 ProSitePatterns Ribosomal protein S17e signature. 81 96 IPR018273 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 Pfam Ribosomal S17 41 160 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 Gene3D - 41 102 IPR036401 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 SUPERFAMILY Rps17e-like 41 102 IPR036401 GO:0003735|GO:0005840|GO:0006412
Dere01g2648 183 FunFam 40S ribosomal protein S17 41 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2648 Dere-ChrDere01 41314977 41315689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2648 41 178 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 81.159 3.55e-76 223