Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2644 ATGTCCATCTCTGACCCACTCCCACTGCATCCATATATCGTCACACGTTCAGTATGGTCTGAAAATCTTGAGTCCGAGTTCAAGTTGATTCGGTCCATCATCGATTCATATCCCCTCATCTCTATGGGTACCGAATTTCCAGGCGTCGTTGTTCGTTCCGACACGGGCGATCCCTACATCCGTCATCGGCACCCTGCCGCTCACTATGCTGTCCTTAAGGCCAACGTTGATCGTTTGCACTTGATCCAAATCGGCCTCACTCTTTCCGACAACGACGGCAACCTTCCCAACCTCGGCACCGCCAATTGGTACATCTGGGAATTCAATTTCAGAGATTTTGATGTGGCCCGCGACGCCCACGCTCGCGACTCGGTAGACCTTTTAAGGTGCCAGGGCATTGATTTCGAGAAGAACAGGGAGTTCGGGATCGACTCGGTGCGGTTCGCTGAGTTGATGATGTCGTCTGGGCTCGTGTGCAATGATGCTGTCAGCTGGGTAACGTTTCACAGTGCTTATGACTTTGGCTACCTGGTAAAGTTGCTGACTCAGCGGACTTTGCCCAATGAGTTGGTCGACTTCATTCGTCTTGTGAGGGTGTTATTCGGGCATAGGGTTTTTGATGTCAAGCACCTCATGAGGTTCTGCCGAAACTTACACGGTGGGTTGGACCGAGTTTGCCAGTCCCTGAATGTTGAACGAGTTATAGGAGAAAGCCATCAGGCCGGTTCAGATAGTCTGCTCACTTTACATGCTTTTCAGAAAATCAGGGAGGTTTACTTTGGCCAGGAAGATGGGCTTATCAAGTATGCTGATGTCTTGTATGGCTTGGAGCTTCTGCCAATAATCATTGAACCACCACTAATACTGGTTGTACGTCATGATATGATCCGTGATAAGTTCTTGAGAAAGACGGAGAAAGAGCGGGCAGGGGATGCCTGCCGGTTTGCACTTTATGGTTTACATCTCTCGAATAGATCAACAACCCCCCTCCATTTAAGGTGTATTCTGATGCTTTTGTCATTGGTTGCAGAAACTGCACAGAGCATAGCGGATTACTTTACATCCATATTTGTTGGTGTCATCATTGCATGGGAGTCGGGTGTTGAAGCAGAGTGA 1116 0.4884 MSISDPLPLHPYIVTRSVWSENLESEFKLIRSIIDSYPLISMGTEFPGVVVRSDTGDPYIRHRHPAAHYAVLKANVDRLHLIQIGLTLSDNDGNLPNLGTANWYIWEFNFRDFDVARDAHARDSVDLLRCQGIDFEKNREFGIDSVRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKLLTQRTLPNELVDFIRLVRVLFGHRVFDVKHLMRFCRNLHGGLDRVCQSLNVERVIGESHQAGSDSLLTLHAFQKIREVYFGQEDGLIKYADVLYGLELLPIIIEPPLILVVRHDMIRDKFLRKTEKERAGDACRFALYGLHLSNRSTTPLHLRCILMLLSLVAETAQSIADYFTSIFVGVIIAWESGVEAE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2644 371 Gene3D - 8 278 IPR036397 GO:0003676
Dere01g2644 371 Pfam CAF1 family ribonuclease 18 143 IPR006941 -
Dere01g2644 371 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 14 277 IPR039637 GO:0004535|GO:0030014
Dere01g2644 371 SUPERFAMILY Ribonuclease H-like 16 276 IPR012337 -
Dere01g2644 371 FunFam Putative CCR4-associated factor 1 7 7 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2644 Dere-ChrDere01 41279984 41281975 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2644 01 41279984 41281975 Dere02g1229 02 11788549 11789274 CCT
Dere01g2644 01 41279984 41281975 Dere01g0167 01 5387334 5388077 ECH
Dere01g2644 01 41279984 41281975 Dere01g2644 01 41279984 41281975 ECH