Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2619 ATGAACCACGCTGCTCCCGCCATGGACGAGCGTTTTCTGAAGCTTGTTTCCGCACTCATTCTCTCACTTGCTGCAGTGGGTTTTAGTGCTACAGACCCAAATGACGTTAAGATTCTCAACCAATTCAGGAAAGGCTTGGACGAACCGGAGCTTCTGCCGTGGCCTGAAGATGGTGGAGACCCGTGTGGGAATCCTCCTTGGAAGTACATCGTCTGCAAGGGAAACAGAGTTTCCCAGATTCAGGCTAAGAACTTGAACTTGAGTGGTCCTCTGCCTCAGAATTTCAACCAGCTCTCCATGCTAGAAAATATCGGCCTTCAGAATAATAAACTCAACGGGCCTTTACCGTCTTTCCGTGGGTTATCCAAGTTGCAGTATGCATACTTGGATTTCAATGACTTCGATTCCATTCCCGCTGATTTCTTTGACGGGCTTGGGAATCTGGAAGTTTTGGCATTGGATTACAATAATCTGAATGGCAGTACTGGATGGCAGTTTCCCCCTCAGTTGCTAGATTCATCTCAATTAACCAACCTTTCGTGTATGAGTTGCAACCTGGCCGGTCCATTGCCGACTTTTCTGGGGAATTTGTCCTCTCTGTCTGTACTGAAGCTTTCAGGCAACAATTTAAGTGGTGAAATTCCGGCGACTTTTAACGGCACGATTTTGCAGATTCTATGGTTGAACAATCAGCAGGGCGGCGGCCTCACAGGTTCTATTGATGTGGTGGCAACCATGACTTCGCTTACGAGTTTGTGGCTTCATGGAAATCAGTTCACGGGGACCATTCCTAAGAACATTGGGGATTTAGCTTCTCTCAAGGATCTCGATCTCAACGGTAACCTGCTCGTTGGCCTAATCCCAGATGCTTTGGCTAAAATGGAACTGGACAAACTTGATTTAAACAATAACCACCTCATGGGTCCGATCCCAAATTTCACTGCACGCAATGTCACTCCTGATTTTAATTCTTTTTGTCAACCCAAACCAGGGGTTCCCTGTGCCTTTGAAGTTATGGCGCTTCTGGAATTTTTAGGTGGGTTGAATTATCCTTTGAATCTAGTTGCGTCATGGTCTGGTAATGACCCATGTAACGCGCCATGGTTGGGACTAAAGTGCGATGCCACAGGAAAGGTTTCTATGATTAATTTGCCCAGATTTAATCTCACTGGTACTCTGAGTCCCTCAGTTGCAAACTTAGGTTCTCTTGTTGAGATCAGACTGGGGGGCAACAATCTGAGCGGTCAAGTACCCAGTAATTGGACTAGCTTGAGTTCTCTGACATTGTTGGATCTCAGTGACAATAACATTTCCCCTCCAATGCCTCAATTTAGCAGCAAGCTGAAACTTTTGACCGATGGGAACTCTCTGTTAAATGTTAAGCCAGAAGCCCCTTCATCTGTGAACAGCTCATCATCTGGGAATTCTAAACCTTCACTTGATACTCCACCTACATCAACACGCACAAGTCCCAATTCCAATAATACTTCAAGACCAGAAAATTCCAGAAGGAAAATTTTGTTTGCAATTGTAGCCCCTGTTGCAGGTGTTGCAGCTGCTGCTTTTCTGCTCATTCCCCTGATATATTGTTACAAGAAGAGAAAAGATGACGTCCTTGCTCCAAGTTCACTAGTAATTCACCCTAGAGATCCATCTGATTCAGACAATAATGTAAAGATTGCTGTCGCTAACAACACCTATGGAAGCACGTCCACATTAACGGGGAGTGGATCTGAAAGTAGAAACAGCAGTGGAATTGGGGAGTCCCATGTCATTGAAGCTGGAAATCTTGTAATATCAGTTCAAGTTCTACGCAATGTGACCAAGAATTTTGCCCCAGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTCGTATACAAGGGAGAATTGGATGATGGGACTCAAATAGCAGTAAAAAGAATGGAAGCTGGTATAATTAGCAACAAAGCCTTGGATGAATTTCAGTCTGAAATTGCAGTTCTATCAAAAGTTCGACACCGCCATCTGGTATCTCTCCTAGGTTACTCTATTGAAGGTAATGAGAGAATCCTAGTTTACGAGTATATGTCACAAGGGGCTCTCAGCAAACATCTTTTCCATTGGAAGAGCTTGAAATTGGAGCCCCTTTCTTGGAAGAGGAGGCTTAATATTGCATTGGATGTTGCCAGAGGAATGGAGTATCTCCATAGTCTGGCTCACCAGAGTTTCATTCACAGAGATCTCAAGCCTTCTAATATTTTGCTTGGGGATGATTTTAGAGCTAAAGTCTCAGATTTTGGATTGGTCAAACTTGCTCCTGATGGCGAAAAATCTGTAGTAACCCAGCTTGCTGGGACCTTTGGATACTTGGCCCCAGAATATGCAGTGACAGGAAAAATCACAACCAAAGCAGATGTCTTTAGTTTTGGCGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGGTAGACCTGAGGAAAGCCAATACTTGCCAGCATGGTTCTGGCATATAAAATCTGATAAGGAGAAACTTATGGCTGCTATCGATCCATCCCTTGATAAAAAAGAAGAAACTTTTGAGAGCATTTCTGTTATTGCCGAGCTAGCTGGGCACTGCACTGCAAGAGAACCAAGCCAGCGACCAGATATGGGCCACGCTGTAAATGTTCTGGCCCCACTTGTTGAAAAATGGAAACCCTTCGATGATGACACTGAGGAGTATTCTGGCATTGATTATAGCCTTCCCCTTAATCAGATGGTGAAGGGCTGGCAAGAGGCAGAAGAAAAGGACTTGAGTTATATGGACCTGGATGACAGTAAGGGTAGTATCCCTGCAAGGCCTACTGGATTTGCCGATTCTTTTACTTCTGCTGATGGTCGCTAA 2874 0.4475 MNHAAPAMDERFLKLVSALILSLAAVGFSATDPNDVKILNQFRKGLDEPELLPWPEDGGDPCGNPPWKYIVCKGNRVSQIQAKNLNLSGPLPQNFNQLSMLENIGLQNNKLNGPLPSFRGLSKLQYAYLDFNDFDSIPADFFDGLGNLEVLALDYNNLNGSTGWQFPPQLLDSSQLTNLSCMSCNLAGPLPTFLGNLSSLSVLKLSGNNLSGEIPATFNGTILQILWLNNQQGGGLTGSIDVVATMTSLTSLWLHGNQFTGTIPKNIGDLASLKDLDLNGNLLVGLIPDALAKMELDKLDLNNNHLMGPIPNFTARNVTPDFNSFCQPKPGVPCAFEVMALLEFLGGLNYPLNLVASWSGNDPCNAPWLGLKCDATGKVSMINLPRFNLTGTLSPSVANLGSLVEIRLGGNNLSGQVPSNWTSLSSLTLLDLSDNNISPPMPQFSSKLKLLTDGNSLLNVKPEAPSSVNSSSSGNSKPSLDTPPTSTRTSPNSNNTSRPENSRRKILFAIVAPVAGVAAAAFLLIPLIYCYKKRKDDVLAPSSLVIHPRDPSDSDNNVKIAVANNTYGSTSTLTGSGSESRNSSGIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTQIAVKRMEAGIISNKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMSQGALSKHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTQLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEGRPEESQYLPAWFWHIKSDKEKLMAAIDPSLDKKEETFESISVIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEEKDLSYMDLDDSKGSIPARPTGFADSFTSADGR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2619 957 MobiDBLite consensus disorder prediction 932 957 - -
Dere01g2619 957 SUPERFAMILY Protein kinase-like (PK-like) 587 887 IPR011009 -
Dere01g2619 957 CDD STKc_IRAK 617 890 - -
Dere01g2619 957 MobiDBLite consensus disorder prediction 461 501 - -
Dere01g2619 957 SMART LRR_typ_2 400 423 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 246 269 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 270 293 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 424 446 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 121 144 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 145 173 IPR003591 -
Dere01g2619 957 SMART LRR_typ_2 197 220 IPR003591 -
Dere01g2619 957 Pfam Protein tyrosine and serine/threonine kinase 614 885 IPR001245 GO:0004672|GO:0006468
Dere01g2619 957 PANTHER OSJNBA0070M12.3 PROTEIN 18 957 - -
Dere01g2619 957 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Dere01g2619 957 Pfam Leucine rich repeat N-terminal domain 338 374 IPR013210 -
Dere01g2619 957 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Dere01g2619 957 Gene3D Transferase(Phosphotransferase) domain 1 689 907 - -
Dere01g2619 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Dere01g2619 957 SMART serkin_6 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2619 957 SUPERFAMILY L domain-like 337 452 - -
Dere01g2619 957 Gene3D Phosphorylase Kinase; domain 1 573 688 - -
Dere01g2619 957 Gene3D Ribonuclease Inhibitor 336 461 IPR032675 -
Dere01g2619 957 FunFam receptor protein kinase TMK1 573 688 - -
Dere01g2619 957 FunFam receptor protein kinase TMK1 689 906 - -
Dere01g2619 957 FunFam Leucine-rich repeat receptor-like kinase 336 461 - -
Dere01g2619 957 ProSiteProfiles Protein kinase domain profile. 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2619 957 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Dere01g2619 957 FunFam Receptor-like kinase TMK4 33 331 - -
Dere01g2619 957 SUPERFAMILY L domain-like 30 313 - -
Dere01g2619 957 Gene3D Ribonuclease Inhibitor 32 330 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2619 Dere-ChrDere01 40997102 41000395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2619 65 924 Receptor kinase-like Gene Family AT1G55610 29.348 6.65e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Dere01g2619 PK_Tyr_Ser-Thr 8.7e-47 CL0016