Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2615 ATGGCGACGTACTTTCATGGTAATTCAGAAATCCAAGCACCCGATGGCCTCCAAACTCTCGTACTCATGAACCCAGGCTACGTCCAGTACTCCGACACGCCCCCGCCACAACCACCGCATCCCAGCAATCTTGTCTTCCTCAATTCCGCCAACAACTCGCTCGCTCCCCAAACCCTCCAACACGCGCCGCCCACTCACACCCAACAATTCGTGGGTATCCCTCTTCCCGCCACAGCAACCGCCTCCCAAGACCCCACCCACCACTCTTCCATGCATCCCCATCACGACGTTTCTGCCTTGCATGGATTCGTGCCCCGCATGCAGTACAACCTCTGGAGCACAATTGACCCCAACGCGGGGGCGCGTGAGATGCCACGCGCACAGCAGGGACTGTCCCTGAGCCTTTCCTCTCAGCAAGCTGGGATGGGGTCTTTCCGGATTGAGCGTGACGTACCATCACAGGGTCAGGCGCCAGCTATGTCAGGGGATGATGTGCGTGTGTCAGGTGGCTCATCGTCTTCGGCGTCCGGGTTGACCAATGGCGTTTCGGGGATTCAGAGTGTGCTTCTGGGCTCCAAGTACTTGAAGGCAGCGCAGGAACTGCTAGACGAGGTTGTGAATGTGAACGATGGGATCAAGACCGAAATGGCGAAGAAAAGTAGCGGACAGACAAAGGTGGTTGGAGAGTCATCCACGGCGGCAAGTGGAGATGGTTCAAATGGCGGGGAGGCAAGCGCCAAGCCTAGCTCCGAGCTTTCAACTGCGGAGAGACAAGAAATTCAGATGAAGAAGGCCAAATTAATCAACATGCTGGACGAGGTGGAGCAAAGGTACAGACAGTACCACCATCAGATGCAGATTGTGAGTTCTTCATTTGAACAAGCTGCTGGAATCGGGTCGGCGAGAACATACACAGCACTAGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAACGGGCCAAATTCGAGCTGCCAGCAAGAGCTTAGGAGAGGAAGATTGCTTTGGTGGAAAAATGGAAGGTTCGAGGCTTAAATATGTGGACCATCATCTACGGCAACAGCGGGCTCTACAACAGTTGGGAATGATCCAGCACAATGCCTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTCCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGATTCAGACAAACACATGCTCGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCGCGGGTTCGTCTTTGGAAACCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCAAGAACAGAATGGGTGTGAGGAGAAATCAAACAAGAGCAGTGATGATCCCGCCATAAAAACTGCAGCCCCACAAGTGAGAGCTCCTGCCTCTGCCACTGAACCCAAAAGTTTCAACTTCAAACAAGATGTTTCCACAAACCAGAATACCCCAAAAGTTTCAATGTCTACACCATCAACATCACCAGTTGGGGGGAATGTCGGAAACCAGTCAGGGTACAGCTTCATGGGGACATCAGAACTAGATGGGATCGCACAACCGAGTCCCAAGAAACCAAGGAACCGTGAGATTCTGCAGTCTCCAATTAACATGGATATGAAGCCAGATGAGTCAGAGAGTGAACAACTCTCCATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGCTACTCTTTCATGGGAAGCCAAACGAACTTCATTGGGGGATTTGGGCAATACCCAATTTCAGAAATTGATAGGTTTGAGGCTGAGCAATTCACACCAAGGTTCTCAGGTAATGGGGTTTCCCTCACTCTGGGTCTTCCCCACTGTGACTCATTATCAGCAGCAACCCATCAAACGTTTCTTCCAAACCAGAGCATTCAACTTGGGAGAAGGATGGACCTGGGTGAACCAAACGAGTTTGGTGGCATAAGCACTTCAGCTCCGCACTCTTCAACTGCATTTGAGAACATCAATATGCAGAACCCAAAGAGGTTTGCTGCACAGTTGTTGCCAGACTTTGTGGCTTAA 2067 0.5128 MATYFHGNSEIQAPDGLQTLVLMNPGYVQYSDTPPPQPPHPSNLVFLNSANNSLAPQTLQHAPPTHTQQFVGIPLPATATASQDPTHHSSMHPHHDVSALHGFVPRMQYNLWSTIDPNAGAREMPRAQQGLSLSLSSQQAGMGSFRIERDVPSQGQAPAMSGDDVRVSGGSSSSASGLTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNDGIKTEMAKKSSGQTKVVGESSTAASGDGSNGGEASAKPSSELSTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAASKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEQNGCEEKSNKSSDDPAIKTAAPQVRAPASATEPKSFNFKQDVSTNQNTPKVSMSTPSTSPVGGNVGNQSGYSFMGTSELDGIAQPSPKKPRNREILQSPINMDMKPDESESEQLSMKFGDERQSRDGYSFMGSQTNFIGGFGQYPISEIDRFEAEQFTPRFSGNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMDLGEPNEFGGISTSAPHSSTAFENINMQNPKRFAAQLLPDFVA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2615 688 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Dere01g2615 688 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 458 - -
Dere01g2615 688 SMART prehox3 183 325 IPR006563 -
Dere01g2615 688 MobiDBLite consensus disorder prediction 151 178 - -
Dere01g2615 688 Coils Coil 257 284 - -
Dere01g2615 688 SUPERFAMILY Homeodomain-like 374 440 IPR009057 -
Dere01g2615 688 Pfam Associated with HOX 188 324 IPR006563 -
Dere01g2615 688 CDD homeodomain 373 433 IPR001356 GO:0003677
Dere01g2615 688 MobiDBLite consensus disorder prediction 217 256 - -
Dere01g2615 688 MobiDBLite consensus disorder prediction 443 512 - -
Dere01g2615 688 FunFam BEL1-like homeodomain protein 9 376 438 - -
Dere01g2615 688 SMART HOX_1 373 437 IPR001356 GO:0003677
Dere01g2615 688 MobiDBLite consensus disorder prediction 480 512 - -
Dere01g2615 688 Gene3D - 376 455 - -
Dere01g2615 688 MobiDBLite consensus disorder prediction 443 460 - -
Dere01g2615 688 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2615 Dere-ChrDere01 40946596 40949067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2615 1 688 Homeobox Transcription Factor Family AT2G35940 50.466 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere01g2615 POX 5.6e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2615 01 40946596 40949067 Dere02g1253 02 12005855 12008423 CCT
Dere01g2615 01 40946596 40949067 Dere01g2615 01 40946596 40949067 ECH