Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2613 ATGGATCAAGTTGAAATCCCAGAGTATTTCATATGCCCAATATCCCTCCAAATAATGAGAGATCCAGTGACTGCTAGTACAGGCATCACTTACGATCGAGCCAGCATCGAACGCTGGCTATTCACCAACAAGAACACCACTTGCCCTGTCACCAAACAGCCTCTGCTATTAGACTCCGACTTAACCCCTAACCACACCCTTCGCCGCCTTATCCAAGCTTGGTGCACCCAGAATGCCTCCCTCGGCGTCGATCGTATTCCCACTCCCAAACCACCCCTTAACAAGTTTCAGGTCCTCAAGGTTCTCAAACACCTCCACCACCCCCACTTGCATCTCCAAACGCTCAGGCACTTGGAACTGCTCGCCGCCGAGAACCCAAGGAACAAGAAGTGCTTGGTGGAGGCTGGTGTTCCCAAAGCCATGATCATGTTCGTTTTGGATTGTTACAAGAAACGACGAGTCAACGAGGGTCTTGAAGAGGCTCTTAGTTTATTGCAGTTTGTTAAGGTTCCCGAGGACGAAATTAAGCTGCTTCTCGCGGAAAATGACCAGATATTGGATTCTCTGATGTGGGTCTTAGGCTGTGAGATGATGGAGAACTCTGAGAGTCTGAAATCCCACGCAATTATAGTGCTCAAAACGATCGTCCAGACGGCCAGCTCTAGTGTTCTGGAAAGACTGAAACCTGAGTTCTTTGAAACAATTGTGAAAATCTTACGAAACGGAATAACCCAACAAGGGATGAACGCTGGTTTGAAAGTGCTATTAGCAGCTTGTCCGTGGGGAAGAAATCGCGAGTTGATGGTGGAAGCGGGTGCAGTCTATGAATTGATTGAGATTGAATTAGGTACGCCAGAGACGAGAACGACGGAGCTCATATTAGGAATACAGTTTCATCTGTGTTCTTGTGCTAATGGCAGAGCTCAGTTTGTAAGTCACAGTGGTGGCATTGCGATGTTGACGGAGAGAATATTGAAAATCTCGCCGACTGCGGATGAAAGAGCCATTTGTATTCTGTCACTGGTATCAAAGTCATCTGCTACACAAATGGTGATTCAGGAGATGCTCAACGTAGGGACGGTGTCCAAGCTTTGCATTTTGCTTCAGGCTGATCATCGCGCGTATCTAAAAGAAAAAGCAATGGAGATACTCAAGTCTCATTCTAAGGTTTGGAAGAACTCTCCTTGCTTTCCAGCTCGATCTTTTTATATATAG 1215 0.4667 MDQVEIPEYFICPISLQIMRDPVTASTGITYDRASIERWLFTNKNTTCPVTKQPLLLDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLNKFQVLKVLKHLHHPHLHLQTLRHLELLAAENPRNKKCLVEAGVPKAMIMFVLDCYKKRRVNEGLEEALSLLQFVKVPEDEIKLLLAENDQILDSLMWVLGCEMMENSESLKSHAIIVLKTIVQTASSSVLERLKPEFFETIVKILRNGITQQGMNAGLKVLLAACPWGRNRELMVEAGAVYELIEIELGTPETRTTELILGIQFHLCSCANGRAQFVSHSGGIAMLTERILKISPTADERAICILSLVSKSSATQMVIQEMLNVGTVSKLCILLQADHRAYLKEKAMEILKSHSKVWKNSPCFPARSFYI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2613 404 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Dere01g2613 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Dere01g2613 404 CDD RING-Ubox_PUB 7 55 IPR045210 -
Dere01g2613 404 SUPERFAMILY RING/U-box 3 82 - -
Dere01g2613 404 SUPERFAMILY ARM repeat 99 385 IPR016024 -
Dere01g2613 404 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Dere01g2613 404 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Dere01g2613 404 Gene3D - 96 394 IPR011989 -
Dere01g2613 404 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Dere01g2613 404 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2613 Dere-ChrDere01 40938591 40939805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2613 2 397 U-box Gene Family AT3G11840 44.545 1.63e-122 361