Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2612 ATGGATGAGATTGAAGTTCCTCCATTCTTTCTGTGCCCCATATCTTTAGAAATCATGAAAGATCCAATCACAGTCTCCTCCGGTATCACCTACGACAGAGAGAGCATCGAGAAATGGCTGTTCTCCGGGAAAAACAAGACGTGCCCTGTCACCAAACAACCTCTCTCGGTATCAGACTCCAGTGATCTCACTCCCAACCACACCCTTCGTCGTCTGATCCAAGCATGGTGTACCATGAACGCCTCTCACGGCATCGAAAGGATCCCAACGCCCAAACCTCCCATCACCAAAACCCAAGTCGCCAAACTCCTCAAAGACGCTTCTCGATCCCCTCACTCACAAACTCAATGCCTCCGAACTCTCAAATCCACCGCTTCCGAAAACGAAGTCAATAAACGCAGCATAGAAGCCGCGGGCGCCGTTGAGTTCCTAGCGTCAATTGTCTTCAGTAACGCAAATTCCCCGTGTTCACCAGAAGACGCTAGCCCGGATGATGATGGGTTTGAATTGAAAACGAGCGCAGGAGATGAAGCCTTAAGCATCCTCCATAGCCTCCAACTGTCCGAAGCTGGCTTGAAGACTCTTATAGCCTTCGAAAACGGATCATTCATTGACTGCTTAACCAGCATCATGCAGAGCGGATTCTACGAGTCACGAGCTTATGCGGTTTTATTGTTAAAATCCATATTTGAAGTGGCTGACTCTAAGCTTTTATCCAATCTAAAAGCTGAATTGTTCGTTGAATTAGTACAACTGCTGAAAGACCAGATATCCCAGCAGGCGTCAAAAGCTACTCTAAGAACACTGATCCAAATATGTCCGTGGGGGAAAAACAGAATAAGAGCAGTGGAAGCGGGAGGTGTGTCGGTTTTGATAGAGCTCCTTCTAGATTGTAAGGATCGGAAGCCATGTGAGATGATGCTGGTGTTGTTGGAGATGCTTTGCGGGTGTGCCGAGGGGAGAGCGGAGCTGTTGAGTCACGGGGCGGGGATCGCGATAGTGTCAAAGAAGATTCTGAGGGTGTCCACCATGGCCAACGACAGGGCGGTGAGGATTCTGCTGTCCATCGCCAAGTTCTCCGCTACTGCTAGCGTTTTGCAGGAGATGATGCAAGTGGGGGTGGTGGCCAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTGGGAACAAGGCCAAGGACAAAGCCAGAGAGATTCTCAAAATGCATGCTCGGGCTTGGAGGAATTCTCCATGCATACCCGCCAATTTGCTTTCCTCTTACCCAAATTGA 1266 0.4937 MDEIEVPPFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKTCPVTKQPLSVSDSSDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPITKTQVAKLLKDASRSPHSQTQCLRTLKSTASENEVNKRSIEAAGAVEFLASIVFSNANSPCSPEDASPDDDGFELKTSAGDEALSILHSLQLSEAGLKTLIAFENGSFIDCLTSIMQSGFYESRAYAVLLLKSIFEVADSKLLSNLKAELFVELVQLLKDQISQQASKATLRTLIQICPWGKNRIRAVEAGGVSVLIELLLDCKDRKPCEMMLVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAVRILLSIAKFSATASVLQEMMQVGVVAKLCLVLQVESGNKAKDKAREILKMHARAWRNSPCIPANLLSSYPN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2612 421 Gene3D - 97 409 IPR011989 -
Dere01g2612 421 SUPERFAMILY ARM repeat 102 407 IPR016024 -
Dere01g2612 421 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Dere01g2612 421 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Dere01g2612 421 CDD RING-Ubox_PUB 7 59 IPR045210 -
Dere01g2612 421 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Dere01g2612 421 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Dere01g2612 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Dere01g2612 421 PANTHER WDSAM1 PROTEIN 3 412 IPR045185 GO:0061630
Dere01g2612 421 SUPERFAMILY RING/U-box 3 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2612 Dere-ChrDere01 40927970 40929235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2612 2 420 U-box Gene Family AT2G35930 56.265 5.47e-173 488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2612 01 40927970 40929235 Dere01g2612 01 40927970 40929235 ECH