Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2607 ATGAATGACTTGTTCTCTGGCTCCTTCTCTCGCTTCCGCGGCGAGGAATCGTCGCCGGACCACCACCACCATGTCATCGAGATGGGTTCCGTCACGGCCTCCACCGGCGGCGTCAATCTTGACAAGTTCTTCGAGGACGTAGAATTGATCAAGGACGAGCTGAAGGAGCTCGAAAGACTGAACCAGAATCTGCAGAGCTGTCACGAGCAGAGCAAGACCCTTCACAATGCCCAGGCCGTCAAGGACCTTCGTTCTCGAATGGACAGCGACGTCGCTCTTGCTCTGAAGAAGGCGAAGCTCATCAAAATCAAATTGGAGGCACTGGAGCGATCCAACGCCGCCAACCGGAGCCTTCCCGGCTGCGGGCCCGGATCGTCGTCGGACCGGACTCGGACCTCCGTGATTAACGGGTTGAAGAAGAAGCTGAAGGACTCCATGGACAGTTTCAATGACCTCAGGCAAAAGATCTCCACCGAGTACCGGGAGACCGTTCAACGCAGGTATTTCACGGTCACCGGCGAGGATCCCGATGAGAAGACTATCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTACAGAAAGCCATCCAAGAACAAGGTAGAGGTAGAATTCTGGACACCATCAACGAAATTCAAGAGAGGCACGATGCTGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCCTGGACATGGCAGTGCTGGTGCAATCACAGGGCGAGCAATTGGACGATATTGAGAGCCACGTGGCGAGAGCAAGCTCCTTTGTGAGGAGTGGAGCCCAGCAGTTGCAGACAGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCCATTTCCCTTCTGCTTGTGATCATCTTGCTTGTGGTGCTCTTCAATGTGAGACCATGGGAAAATAATGGTGGTAGTCCGCCATCATCATCCCAAACACCCTCACCACCCCCTCCTCCTCCTCCTGCTGCAGCTTAA 993 0.5347 MNDLFSGSFSRFRGEESSPDHHHHVIEMGSVTASTGGVNLDKFFEDVELIKDELKELERLNQNLQSCHEQSKTLHNAQAVKDLRSRMDSDVALALKKAKLIKIKLEALERSNAANRSLPGCGPGSSSDRTRTSVINGLKKKLKDSMDSFNDLRQKISTEYRETVQRRYFTVTGEDPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFLDMAVLVQSQGEQLDDIESHVARASSFVRSGAQQLQTARKHQKNTRKWTCYAISLLLVIILLVVLFNVRPWENNGGSPPSSSQTPSPPPPPPPAAA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2607 330 Pfam SNARE domain 246 298 IPR000727 -
Dere01g2607 330 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Dere01g2607 330 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Dere01g2607 330 CDD SynN 40 197 IPR006011 GO:0016020
Dere01g2607 330 MobiDBLite consensus disorder prediction 307 330 - -
Dere01g2607 330 Coils Coil 40 77 - -
Dere01g2607 330 PANTHER SYNTAXIN 59 295 IPR045242 -
Dere01g2607 330 CDD SNARE_syntaxin1-like 209 271 - -
Dere01g2607 330 SMART tSNARE_6 205 272 IPR000727 -
Dere01g2607 330 Coils Coil 135 155 - -
Dere01g2607 330 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Dere01g2607 330 MobiDBLite consensus disorder prediction 315 330 - -
Dere01g2607 330 Gene3D - 206 302 - -
Dere01g2607 330 FunFam Syntaxin 132 203 303 - -
Dere01g2607 330 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere01g2607 330 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Dere01g2607 330 Gene3D - 38 170 - -
Dere01g2607 330 SMART SynN_4 35 161 IPR006011 GO:0016020
Dere01g2607 330 Coils Coil 210 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2607 Dere-ChrDere01 40885258 40886666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2607 28 329 SNARE and Associated Proteins AT3G11820 74.516 6.99e-162 452