Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2606 ATGAACGACCTGTTTTCCGGCTTCCGCAGCGAGCAAGTCTCGCCAGACAAAGACCACCGCGTCATCCAGGTGACGGCAATGTCGCCGTCGAGTGACGGCGTCAACCTCGACAAGTTCTTCTCAGATGTAGAGTCCGTTAAGGAGGAGCTGAAGGAGCTGGAGAGGCTCAACCAGAGCCTCCGCGGGTCCCACGAACAGAGCAAGACCCTTCACACCGCCGACACTGTGAAGGACCTTCGCTGTCGCATGGACGCCGACGTGGCTCTGGCTCTCAAGAAAGCTAAGCTCATTAAGGTCCGGCTGGAAGCACTGGACCGCTCCAATGAAGCCAACCGGAGCTTGCCAAATTGCGGACCGGGGTCTTCTTCGGACCGGACTCGGACCTCGGTGGTCAGCGGGTTAAGAAAGAAGTTGAAAGACTCCATGGACAGCTTCAACAATCTCAGACAAAAGATATCCAGTGAGTACAGGGAGACCGTACAACGCAGGTACTACACTGTCACCGGCGAGAACCCCGACGACGAAACCATTGACCTCCTCATCTCCAATGGTGAAAGCGAGAGATTCTTAAAGAAGGCCATACAGGAGCAGGGAAGAGCAAGCGTGTTGGAGACGATAAGGGAGATTCAAGAGAGGAACGATGCAGTGAGAGGGATAGAAAGGAATCTGAATGAGCTGCACCAAGTGTTCATGGACATGGCAGTGTTGGTGCAATCTCAAGGTGAACAATTGGACGACATAGAAAGCCACCTGGCTCGAGCTAATTCCTTCGTAAGGAGTGGGGTTCACCAACTGCATGTTGCCAAGAAGCATCAGAAAAATACCCGCAAATGGACCTCTTTTGCCATTCTAATCCTCCTCATTATCATCTTAATTATACTTCTCCCTATTCTTCTAAGAAACTGA 906 0.5188 MNDLFSGFRSEQVSPDKDHRVIQVTAMSPSSDGVNLDKFFSDVESVKEELKELERLNQSLRGSHEQSKTLHTADTVKDLRCRMDADVALALKKAKLIKVRLEALDRSNEANRSLPNCGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQKISSEYRETVQRRYYTVTGENPDDETIDLLISNGESERFLKKAIQEQGRASVLETIREIQERNDAVRGIERNLNELHQVFMDMAVLVQSQGEQLDDIESHLARANSFVRSGVHQLHVAKKHQKNTRKWTSFAILILLIIILIILLPILLRN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2606 301 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere01g2606 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Dere01g2606 301 Coils Coil 36 66 - -
Dere01g2606 301 CDD SynN 36 193 IPR006011 GO:0016020
Dere01g2606 301 Pfam SNARE domain 242 294 IPR000727 -
Dere01g2606 301 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Dere01g2606 301 FunFam Syntaxin 132 199 299 - -
Dere01g2606 301 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Dere01g2606 301 SMART SynN_4 31 157 IPR006011 GO:0016020
Dere01g2606 301 PANTHER SYNTAXIN 44 291 IPR045242 -
Dere01g2606 301 Gene3D - 34 166 - -
Dere01g2606 301 Gene3D - 195 299 - -
Dere01g2606 301 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Dere01g2606 301 CDD SNARE_syntaxin1-like 205 265 - -
Dere01g2606 301 SMART tSNARE_6 201 268 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2606 Dere-ChrDere01 40881971 40883450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2606 30 279 SNARE and Associated Proteins AT3G11820 76.000 4.14e-139 394