Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2604 ATGGCTGCCGCAGCTACTGCTTCCTCTTCCATCTGCAATCGAATCTATAGCCTCTACTTCACTCCCTCTGCCTTCTCAATTACTACCAAATTCCCTCACAAACCCATTTCCCAAAAACCTCTCAACCTCATTCTCAAACCCCAACTCGTCAATTCCTCTCCTCTCTCTCTCTACCATTTTCGTTTGGCTTCGGCTGCCTTCGATGGATTCGAAGTCGGTCAAGACAGCACGAGCGCCCAGCAGGATGACCCAGAAGCTGAACCATTTGAAAAATCAGAAGAAGAAGCTGAAGAAGAGGAGGAAGAGCAGAAGGTATCAGACTCAAACGAAGTAGGGAGGCTCTATGTCGGCAACTTGCCCTTTTCAATGACTTCCTCTCAGTTATCTGAGATTTTTGAAGAGGCTGGTAGAGTTGTTTCTGTGGAGATAGTGTATGATCGCGTTACGGATAGAAGCAGAGGATTTGCATTTGTAACAATGGGGAGCGCTGAAGATGCTAAAGAAGCCATTCGAATGTTTGATGGCTCCCAAATTGGAGGTAGGACAGCAAAAGTAAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGCTGGTGATGGGGCCAAAAGTAAGGAACAATTACAGAGGCTTCATAGACAGCCCTTACAAGATATATGCTGGAAACCTTGGTTGGGGGTTGACTTCACAGGGTCTCAGAGATGCTTTTGCTGCACAGCCAGGCTTTCTGAGTGCCAAGGTCATCTATGAGAGGGACACTGGAAGATCTCGAGGTTTTGGCTTTGTCTCTTTCCAAACTGCTGAGGACGTTGAGGCTGCTTTGAATGCCATGAATGGTGTGGAGGTTCAAGGCAGGGCTATGCGACTGAATTTGGCTGCAGATAGGACAACAGAATCTGCATCTGCTCCATTGGCGGAGGAAAATGTACAGGCTATTGTTGATAGCTCGGAATTGGTGTCTAGTGTCAGCACATGA 972 0.4743 MAAAATASSSICNRIYSLYFTPSAFSITTKFPHKPISQKPLNLILKPQLVNSSPLSLYHFRLASAAFDGFEVGQDSTSAQQDDPEAEPFEKSEEEAEEEEEEQKVSDSNEVGRLYVGNLPFSMTSSQLSEIFEEAGRVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQIGGRTAKVNFPEVPRGGERLVMGPKVRNNYRGFIDSPYKIYAGNLGWGLTSQGLRDAFAAQPGFLSAKVIYERDTGRSRGFGFVSFQTAEDVEAALNAMNGVEVQGRAMRLNLAADRTTESASAPLAEENVQAIVDSSELVSSVST 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2604 323 Gene3D - 200 301 IPR012677 -
Dere01g2604 323 MobiDBLite consensus disorder prediction 73 109 - -
Dere01g2604 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 286 IPR000504 GO:0003723
Dere01g2604 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Dere01g2604 323 FunFam 33 kDa ribonucleoprotein, chloroplastic 197 301 - -
Dere01g2604 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Dere01g2604 323 CDD RRM2_NsCP33_like 216 291 - -
Dere01g2604 323 SMART rrm1_1 113 186 IPR000504 GO:0003723
Dere01g2604 323 SMART rrm1_1 216 289 IPR000504 GO:0003723
Dere01g2604 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Dere01g2604 323 Gene3D - 69 194 IPR012677 -
Dere01g2604 323 PANTHER OS02G0815200 PROTEIN 35 294 - -
Dere01g2604 323 SUPERFAMILY RNA-binding domain, RBD 113 291 IPR035979 GO:0003676
Dere01g2604 323 CDD RRM1_PSRP2_like 113 192 - -
Dere01g2604 323 MobiDBLite consensus disorder prediction 87 105 - -
Dere01g2604 323 Coils Coil 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2604 Dere-ChrDere01 40851012 40852560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2604 114 299 Eukaryotic Initiation Factors Gene Family AT1G49760 29.474 1.88e-11 63.2