Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2603 ATGCCTCTGCTTCTACCACTTAGATGAAATAGTTTACAGAAAAAAGATAAATCATCATTTGGATTATATTCGAGCGTGTATATGGCCATGCAAACTGTCTATTACAAAGAAGCTGAAGGAACTGCCCACAATTCCGTTGGGCAGATGTCATCTGTAGCTTCAGCCCCCTGGTGGAGTGCGTTGGGGTCCCAATCAATCTTTGGGGACTCTTGCGGCCAAGTGAAAACTTTTTCGTTGGAGATTCCCAACTATGTAGACCAACTCGCTGCCACTAAGCAAACAGGAAGAGAAGCTGAACAAGTGTTTGATAAAGGACATACAACTCAGTTCACTATCTTTTCAGATGATTTTAAAATGTCAGGTGATACACATAAGTCTCAGATTGGCATGTCACTTCAGTCATCAATTCCTGATCCTCGCACTCGTGTTGAGCTGGGATTCAGTCAGCCTATGATCTGCGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTTCTCAACTTATGGACTTCAAATGCCGGGCCGTATAATGCTGCCACTTGACATGACATCCGATGATGGACCAATTTATGTTAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCCCGTGCAAAGGCTGTACTGGAGAATAAATTGACCAAACGTCGCAAGCCCTATATGCATGAATCACGCCACCTCCACGCAATGCGGCGACCAAGAGGATGCGGCGGTCGTTTCTTGAACACAAGAAGCTTGAACAACCGAAATGCAAAAAGTGGAAGTGAAGTGAATAAATCTGGTTACGGCCAATTGCAGTCCAGTGGTTCTCAGAGCTCTGAAGCCCTGCAATCATCAAAGGAAACAAGTGGCAGCAGTCCACACATGTCAGGTTCCGAGGTGACTAGCATGTATTCAAGGGGAGGCCTTGATCATGGCTTTACGTTGAACCATCTTGGATCAGCTGTTCATCACTCTCTGGCAGATATGATCGATAGTCACGGTGGGGGTGGCATCGTCATGCCAACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAGCCTTAAAATGAAGAAGCTTTGTTGCGGTTTCCTTGTGGTTACTGTGACGAGTTTCGTTTGTGGGGCTTCCTCCGACATCTGGTTTGAAGGCAATTCATTCTTGGCTCACGAAATTTGCTGGCAAATCGTCCTTGGCTCAGTAGTTACTATCTATAGAACTATTGTCTGTCTTACTGCTCAGGCCTGTCACTGTCTTGGCATGTTTACACATGCTAATGGCTTGACATCCTGA 1281 0.4559 MPLLLPLRXNSLQKKDKSSFGLYSSVYMAMQTVYYKEAEGTAHNSVGQMSSVASAPWWSALGSQSIFGDSCGQVKTFSLEIPNYVDQLAATKQTGREAEQVFDKGHTTQFTIFSDDFKMSGDTHKSQIGMSLQSSIPDPRTRVELGFSQPMICAKYPYMDQFYGLFSTYGLQMPGRIMLPLDMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLENKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRSLNNRNAKSGSEVNKSGYGQLQSSGSQSSEALQSSKETSGSSPHMSGSEVTSMYSRGGLDHGFTLNHLGSAVHHSLADMIDSHGGGGIVMPTKWVAAAGNCCSLKMKKLCCGFLVVTVTSFVCGASSDIWFEGNSFLAHEICWQIVLGSVVTIYRTIVCLTAQACHCLGMFTHANGLTS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2603 426 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 189 243 IPR001289 GO:0003700|GO:0006355
Dere01g2603 426 ProSiteProfiles NF-YA/HAP2 family profile. 186 246 IPR001289 GO:0003700|GO:0006355
Dere01g2603 426 MobiDBLite consensus disorder prediction 220 300 - -
Dere01g2603 426 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 86 304 IPR001289 GO:0003700|GO:0006355
Dere01g2603 426 MobiDBLite consensus disorder prediction 221 236 - -
Dere01g2603 426 SMART cbf3 185 246 IPR001289 GO:0003700|GO:0006355
Dere01g2603 426 Gene3D - 186 248 - -
Dere01g2603 426 MobiDBLite consensus disorder prediction 244 300 - -
Dere01g2603 426 PRINTS CCAAT-binding transcription factor subunit B signature 189 211 IPR001289 GO:0003700|GO:0006355
Dere01g2603 426 PRINTS CCAAT-binding transcription factor subunit B signature 220 243 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2603 Dere-ChrDere01 40844041 40848722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2603 28 360 CCAAT-HAP2 Transcription Factor Family AT3G05690 39.888 1.54e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere01g2603 CBFB_NFYA 7.9e-26 No_clan