Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2601 ATGAACAACGCAAGCGATTCCTCAGTATTTCTGGGTTCAGAGAGCATAAGTGGGTTTGGGTATGGCATAGGAGTGTCGATTGGGATTCTGCTTCTGATCACAACCATCGCGCTTGCTTCCTACTTCTGCACCCGCAGACAGGTTCCTGCTGCGCCGCCGACGCACAGGATCAATGCTCTGGAGCCGCACCATGAGGTAGTTGATGTGGGAGGGATGGATGAAGCCACGATTCTGAGTTACCCGAGGGTGCTATACTCTGAGGCCAAGCTCAAGAAACGTGATTCCGCTGCCACGTGTTGCTCCATATGTCTGGCCGATTACAAGGGGAGTGATATGCTTCGGCATTGCTGTCTCTCTCTCTATATATATACCTCATCTACCCGTGCCTGTGTGTGCCCCTTACTACTCGCCGAATCGGAATCCATGGAGATTTTGCCCTTCAAGCTCGTCGTTCCCTTCTCTTTATTGCTGTGTCTGATTTGCACATTGGCTCACGGCACCGACGTGCAGTACTGCGAGACCAAAACCAGTTATGGTGTCAAAGTCAAAGGAGTTGAGATATCTCCTGATCCCGTTGCAAGAGGCCAACCTGCCACATTCAGCATAGCTGCAGCTACTGGGAAAGCAATATCTGGAGGGAAACTGGTAATTGATGTCGCATATTTTGGGTGGCACATACACAGTGAGACCCATGACCTTTGTGCAGAGACGACTTGCCCTGTTTCAGTTGGTGATTTTGTGGTTTCTCATACACAAGTTTTACCTGGATTCACCCCTCCTGGTTCTTACTCTTTGAACATGAAGATGTATGATGGAAACAGAAATGAGTTGACTTGTATTAAATTCGGATTTAATATTGGATTCGTTTCCTCTGTGGCCGATATCTGA 888 0.4842 MNNASDSSVFLGSESISGFGYGIGVSIGILLLITTIALASYFCTRRQVPAAPPTHRINALEPHHEVVDVGGMDEATILSYPRVLYSEAKLKKRDSAATCCSICLADYKGSDMLRHCCLSLYIYTSSTRACVCPLLLAESESMEILPFKLVVPFSLLLCLICTLAHGTDVQYCETKTSYGVKVKGVEISPDPVARGQPATFSIAAATGKAISGGKLVIDVAYFGWHIHSETHDLCAETTCPVSVGDFVVSHTQVLPGFTPPGSYSLNMKMYDGNRNELTCIKFGFNIGFVSSVADI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2601 295 CDD PG-PI_TP 169 284 IPR033917 GO:0032366
Dere01g2601 295 SMART pgtp_13 169 284 IPR003172 -
Dere01g2601 295 Gene3D - 167 288 - -
Dere01g2601 295 FunFam putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 167 288 - -
Dere01g2601 295 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 147 286 IPR039670 GO:0015918|GO:0032934
Dere01g2601 295 SUPERFAMILY E set domains 167 286 IPR014756 -
Dere01g2601 295 Pfam ML domain 167 284 IPR003172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2601 Dere-ChrDere01 40812702 40816991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2601 12 114 C3H Transcription Factor Family AT5G06490 40.625 5.17e-22 89.7