Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2598 ATGACCCGTTTCTTAGAGAAGATCCGCCTCTCGTCCCTGGTCGCCAAACCGACCCGCTTTCTCTCTCAGAAGCTCACGGTCCTCTCGCTCTCCACCTTCCATCTCTGCAAGTCCCTTGCTCGCTTCCTACTCTCTAAAACCCTCTCATTCCTCACCATGGACACTTTCTTCGCCGATCATGACGATTACTTTTGGGACATCGATTCTCGTCCCCAGCGTCGCTTTCTTCGAGAACAGGAGCCTCAGTTGGAGAATGAACCCCTCTTCTTGGTTATTTACAGGTGGTGGAAAGAAGTAGAAGGGGATGCTGACCGATTAGAAAATGTCCGTTATACAGTGTCAACGAACTCTGCCTTTGAGTCAGACTCAGAAATTGTGCTACATTTAAGGAAGGAGGACAGCCACGAGGAAACGATGGATACTGAGGTGGGGTTTTCTGGCCGTCAATATGCATTGGTTCCTGAAGGATTGTGGCTGCGCGCTCTCAAACGGTGTAGTGATTCTAATAATGCGGCGAAGGATTCTGGGAGACTCTTCTATACAGAAGAGCCAGATTTGTTCCCCTTGCAAGTTAGGATATTTGTTTCATGGGAAACAAATTCTTTGGTAGCAAAGATAAGCCAAAAGATAGCATGGTTTCAGGAAAATGTGGTTGAATTCTACAAGAAGGCTTGCAAAATTTTCAGTTCTGAGTACAACCCAGTGCATATTTTGGACTTCTCGGGGCAGACAACCCAGTTTTTCATAAATGATAATGAGTCTCCTGGGAATCTTGGAAAAGGGGTTTCTCTGGAGCTGCAAGTTTATGGACTTTCTGATTCTATAAATGGTAATAGAAGCAATGAGATATTTGCAGATAGGTCTACACTGGGATGTTCCTCTTACAGTGGCTCTGTTATGATGAATGGAACCACTCACAATGTGAATTCCTATGTAACACCTACCAACTCCGTTAGAAGGAGTAGTTATAGAGCAGTTGGCTCTTTGGGCTTGACTGGATTACAGAATCTTGGAAATACTTGTTTTATGAATAATGCCATTCAGTGTCTGGTTCACACCCCCAAGCTGGTTGACTTTTTCCTGGGAGATTACCGGAAAGAAATAAATTATGAAAATCCCCTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAAAGCTATGGTTTCCTGGAGCAAGACCCATAGCTCCAAGGACGTTCAAGATCAAACTTGCTAATTTTGCTCCTCAGTTTGGTGGTTATAATCAGCATGATTCTCAAGAATTTCTTGCTTTTCTGTTGGATGGACTCCATGAAGACCTGAATCGTGTAAAGCGCAAGCCATATCATGAAGTCAAAGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAATATTGGCGTAATCACCTTGCTCGCAATGACTCCATAATAGTTGATTTGTGCCAAGGTCAGTTCCGGTCAACATTGGTTTGCCCTGTTTGCAAGAAGGTTTCTATCACTTTTGACCCTTTTATGTACCTATCTTTGCCGTTACCTTCTACAATGATGCGGACGATTACGTTGACTGTCCTGAGCACTGATGGGATTACACTGCCTTCCACATTTACCATAACATTACCCAAGAGTGGAATATTGATGGATCTTATTCAGGCCGTAGGTTCTGCATGTTCGTTAAGGGATGATGAAACTCTCTTGATGGCTGAGATATACAAGAATCGCATTTGTCGACTGTTGGAGGAGCCATCTGATTCATTAGCCTTGATTAGAGATGAGGACAAACTTGTTGCATATCGATTACCAAAAGATTATGAGGCTGGCCCCTTGGTTGTTTTCATGCATCAGCAGGTGTCAATGCATTACAGTTTTGGGAGGGAGAAGTTGGTAGAAAGTTTGTTTGGCATTCCTATTGCGGCAAGGTTGCCCAGTGTTTCTTGTGGATATGACATTCGTAGGGAGTTTCTAAAGTTAATTAATCCATTTCTGATGTCCTCTGAAGATGTATTGGATGATTATGATAATGATGATGATGTGGACATTAAAGTTTGTGAAGATAATGAATTGGGTGATGCGACTAGCTCTGCATGCTTGGAAAGTGATTCGGATTCAGATTTGGAGGCTGACTTCAAATTCTACTTACCTGCAGCTCTAGGAATGGAGAATGTAAAGATTAAAATGAACAAACCATTACCAATCACAGTTCTTCCCAAAAAGTTGGAGGTGGCTGTCTTATGGTCAGACAAGATGATTAAGAAGTATGATACATGCTTGCTCAGCTCATTGCCTGAGGTTTTCAAGCCGCAGTTATTCACCAAGAGAACACAAGAATCGGTTTCCATTTACCAGTGTCTCGAAGCCTTTTTAAAAGAGGAGCCTCTTGGGCCAGAAGACATGTGGTACTGTCCCAGCTGCAAAAGACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATTCAGCAGATACTTCAAGAATAAACTGGAAACGTTCGTTGATTTCCCAATCAATGATTTGGATCTCTCAACATATGTTGCCCACAAGAATAGCCAATCTTCCAATCATTATGAGTTGTATGCGATCAGTTGTCATTATGGAGGCTTGGGAGGAGGTCACTATACAGCATTTGTTCGTTATGGACATGATAAATGGTACGAGTTTGATGATAGCAGGGTTGTCCCTGCCGGTGAGGACTCTATAAAGACTTCTGCAGCATACGTTCTCTTCTACAGGAAAGTTTAA 2772 0.4257 MTRFLEKIRLSSLVAKPTRFLSQKLTVLSLSTFHLCKSLARFLLSKTLSFLTMDTFFADHDDYFWDIDSRPQRRFLREQEPQLENEPLFLVIYRWWKEVEGDADRLENVRYTVSTNSAFESDSEIVLHLRKEDSHEETMDTEVGFSGRQYALVPEGLWLRALKRCSDSNNAAKDSGRLFYTEEPDLFPLQVRIFVSWETNSLVAKISQKIAWFQENVVEFYKKACKIFSSEYNPVHILDFSGQTTQFFINDNESPGNLGKGVSLELQVYGLSDSINGNRSNEIFADRSTLGCSSYSGSVMMNGTTHNVNSYVTPTNSVRRSSYRAVGSLGLTGLQNLGNTCFMNNAIQCLVHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARPIAPRTFKIKLANFAPQFGGYNQHDSQEFLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPVCKKVSITFDPFMYLSLPLPSTMMRTITLTVLSTDGITLPSTFTITLPKSGILMDLIQAVGSACSLRDDETLLMAEIYKNRICRLLEEPSDSLALIRDEDKLVAYRLPKDYEAGPLVVFMHQQVSMHYSFGREKLVESLFGIPIAARLPSVSCGYDIRREFLKLINPFLMSSEDVLDDYDNDDDVDIKVCEDNELGDATSSACLESDSDSDLEADFKFYLPAALGMENVKIKMNKPLPITVLPKKLEVAVLWSDKMIKKYDTCLLSSLPEVFKPQLFTKRTQESVSIYQCLEAFLKEEPLGPEDMWYCPSCKRPQQATKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSTYVAHKNSQSSNHYELYAISCHYGGLGGGHYTAFVRYGHDKWYEFDDSRVVPAGEDSIKTSAAYVLFYRKV 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2598 923 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 332 923 IPR028889 -
Dere01g2598 923 CDD Peptidase_C19R 751 921 - -
Dere01g2598 923 Gene3D Cysteine proteinases 614 923 - -
Dere01g2598 923 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 285 922 - -
Dere01g2598 923 Pfam Ubiquitin carboxyl-terminal hydrolase 332 920 IPR001394 GO:0004843|GO:0016579
Dere01g2598 923 Gene3D Cysteine proteinases 318 534 - -
Dere01g2598 923 SUPERFAMILY Cysteine proteinases 330 922 IPR038765 -
Dere01g2598 923 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 866 883 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2598 Dere-ChrDere01 40773639 40781793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2598 767 923 Miscellaneous Gene Families AT4G31670 31.250 5.55e-17 84.0