Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2590 ATGGAGGTTCCAGAGATGGAAGACAAGAACAATGAAAGTCATATGACATCAGCTGCTGCCTTTGTGGAGGGGGGGATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCATCAACGGTTACTACTTGCAAGCATGACTTTCACCTGCAGTGCATTCTTGAATGGTGCCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAATCTATTAGTTTCAAGGATTCTATCAGTCAAGAATTGCTTGAGGCAGTGGTGCGGGAAAGGAATTTCAGGGTTACTGCATCAAGAAATGCTGCTATTTTCCATCATCCTGCTTTTGGTGATTTTGACTTGCAGCATTTATCCATGGGAGTAAATGAAGGAGATATTGAAGAGAGGATAATTCAACATTTAGCTGCTGCTACAGCCATGGGAAGAGCACACCACCTAGGTCGGAGGGAAGGACATAGAACTAGGCCATCTCCTCATGGTCGTCCACACTTTTTAGTGTTCTCAACACCTCCACCTGGTGCTGTTTCAGCTGCTGGAGGGGGTACCGAACCAACTGCAATTCCTGTAGGAAATCCATCGACCCCCCTTACATCTGAAGGAGATGAAACATCGCAGCAGATTCCACATCATGAAAATGAGAGTTCTTTAGCTCCTGGATCTACTGTCCTGGCAACAAATCATCAAGGAATGTTTTTTAATGATAGAGGATCAGCTATACATTCTGTACCACCTAGCCAAGGTAGAGCAGGGCCATCAGAACTTCAGTCATTTTCTGAGTCTTTACGATCCAGACTTGGTTCAGCGTCAATGAGATACAAAGAGACCATCTCAAAGGGTGCTAGGGGATGGAAGGAGAAGCTGTTCTCTCGTAGTACTTCCATGTCTGATATTGGTTCAGAAGTTAGGAGGGAGTTGAGTGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGTCTTGAAACTAGAGAAAAGAATAATAGAGCGGGGGGTACTTCTTTCATCTCATATTTGAAGGCTAATTATTACTCCAGACATGAAATGCTGAGGAGCAGATGA 1071 0.4491 MEVPEMEDKNNESHMTSAAAFVEGGIQEACDDSCSICLEDFSESNPSTVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSISQELLEAVVRERNFRVTASRNAAIFHHPAFGDFDLQHLSMGVNEGDIEERIIQHLAAATAMGRAHHLGRREGHRTRPSPHGRPHFLVFSTPPPGAVSAAGGGTEPTAIPVGNPSTPLTSEGDETSQQIPHHENESSLAPGSTVLATNHQGMFFNDRGSAIHSVPPSQGRAGPSELQSFSESLRSRLGSASMRYKETISKGARGWKEKLFSRSTSMSDIGSEVRRELSAGIASVSRLMERLETREKNNRAGGTSFISYLKANYYSRHEMLRSR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2590 356 SMART ring_2 34 74 IPR001841 -
Dere01g2590 356 MobiDBLite consensus disorder prediction 192 222 - -
Dere01g2590 356 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 12 84 - -
Dere01g2590 356 MobiDBLite consensus disorder prediction 178 222 - -
Dere01g2590 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Dere01g2590 356 Pfam Ring finger domain 32 74 IPR001841 -
Dere01g2590 356 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Dere01g2590 356 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 82 - -
Dere01g2590 356 SUPERFAMILY RING/U-box 26 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2590 Dere-ChrDere01 40739762 40743354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2590 31 85 C3H Transcription Factor Family AT4G00335 45.455 5.68e-14 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2590 01 40739762 40743354 Dere01g2590 01 40739762 40743354 ECH