Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2565 ATGGCTGCTGCAGTGGCGGTTCCTCATGAAGTTGTGAAGCATCAAGATTTGACCCAGATCGAGGTGAAGCTCTTTAATCGGTGGAGCTTCGATGACGTTCAGGTTAATGACATTTCTCTGGCTGATTATATTGGAGTGGCGGCATCCAAGCATGCTACTTATGTTCCTCACACAGCTGGTAGGTACTCAGTAAAGCGATTCAGGAAAGCCCAGTGCCCAATAGTTGAGAGGCTTACCAACTCTCTGATGATGCATGGTAGAAACAATGGGAAGAAATTAATGGCTGTGAGAATTATCAAACATGCTATGGAAATCATTCATTTGCTGACTGATCAGAACCCCATTCAAGTAATTATTGATGCTGTGATTAATAGTGGTCCCCGTGAAGATGCGACTCGAATAGGCTCTGCCGGGGTTGTTAGGAGACAGGCTGTGGATATTTCACCCCTGCGCCGTGTTAATCAGGCCATCTATCTTTTAACAACAGGTGCACGTGAAGCTGCTTTCAGAAATATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCGTCTAACAGCTATGCTATCAAGAAAAAGGATGAGATTGAAAGAGTTGCCAAGGCCAATCGTTAA 633 0.4423 MAAAVAVPHEVVKHQDLTQIEVKLFNRWSFDDVQVNDISLADYIGVAASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIIDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2565 210 Pfam Ribosomal protein S7p/S5e 64 210 IPR023798 -
Dere01g2565 210 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 210 IPR000235 GO:0006412
Dere01g2565 210 FunFam 40S ribosomal protein S5 4 210 - -
Dere01g2565 210 NCBIfam 30S ribosomal protein S7 21 210 IPR005716 GO:0003735|GO:0006412|GO:0015935
Dere01g2565 210 CDD uS7_Eukaryote 23 210 IPR005716 GO:0003735|GO:0006412|GO:0015935
Dere01g2565 210 ProSitePatterns Ribosomal protein S7 signature. 76 102 IPR020606 GO:0003723|GO:0003735|GO:0006412
Dere01g2565 210 Gene3D Ribosomal protein S7 domain 3 210 IPR036823 -
Dere01g2565 210 PANTHER RIBOSOMAL PROTEIN S7 13 210 IPR000235 GO:0006412
Dere01g2565 210 SUPERFAMILY Ribosomal protein S7 23 210 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2565 Dere-ChrDere01 40474208 40478051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2565 1 210 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.095 6.93e-136 377