LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g2565	ATGGCTGCTGCAGTGGCGGTTCCTCATGAAGTTGTGAAGCATCAAGATTTGACCCAGATCGAGGTGAAGCTCTTTAATCGGTGGAGCTTCGATGACGTTCAGGTTAATGACATTTCTCTGGCTGATTATATTGGAGTGGCGGCATCCAAGCATGCTACTTATGTTCCTCACACAGCTGGTAGGTACTCAGTAAAGCGATTCAGGAAAGCCCAGTGCCCAATAGTTGAGAGGCTTACCAACTCTCTGATGATGCATGGTAGAAACAATGGGAAGAAATTAATGGCTGTGAGAATTATCAAACATGCTATGGAAATCATTCATTTGCTGACTGATCAGAACCCCATTCAAGTAATTATTGATGCTGTGATTAATAGTGGTCCCCGTGAAGATGCGACTCGAATAGGCTCTGCCGGGGTTGTTAGGAGACAGGCTGTGGATATTTCACCCCTGCGCCGTGTTAATCAGGCCATCTATCTTTTAACAACAGGTGCACGTGAAGCTGCTTTCAGAAATATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCGTCTAACAGCTATGCTATCAAGAAAAAGGATGAGATTGAAAGAGTTGCCAAGGCCAATCGTTAA	633	0.4423	MAAAVAVPHEVVKHQDLTQIEVKLFNRWSFDDVQVNDISLADYIGVAASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIIDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR	210

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g2565	210	Pfam	Ribosomal protein S7p/S5e	64	210	IPR023798	-
	Dere01g2565	210	PIRSF	RPS7p_RPS7a_RPS5e_RPS7o	1	210	IPR000235	GO:0006412
	Dere01g2565	210	FunFam	40S ribosomal protein S5	4	210	-	-
	Dere01g2565	210	NCBIfam	30S ribosomal protein S7	21	210	IPR005716	GO:0003735\|GO:0006412\|GO:0015935
	Dere01g2565	210	CDD	uS7_Eukaryote	23	210	IPR005716	GO:0003735\|GO:0006412\|GO:0015935
	Dere01g2565	210	ProSitePatterns	Ribosomal protein S7 signature.	76	102	IPR020606	GO:0003723\|GO:0003735\|GO:0006412
	Dere01g2565	210	Gene3D	Ribosomal protein S7 domain	3	210	IPR036823	-
	Dere01g2565	210	PANTHER	RIBOSOMAL PROTEIN S7	13	210	IPR000235	GO:0006412
	Dere01g2565	210	SUPERFAMILY	Ribosomal protein S7	23	210	IPR036823	-

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g2565	Dere-ChrDere01	40474208	40478051	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g2565	1	210	Cytoplasmic Ribosomal Protein Gene Family	AT2G37270	88.095	6.93e-136	377

Showing 1 to 1 of 1 entries