Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2564 ATGCCATTTTTGGGTTTTGTTACTCCATTCTCGTCTACGGGTAAGATCAGAGCTGCCGCCACCCACACGTTCTTCTCCGTCTCACTCACATTCGTCGTCTTTGCTCAGATCAGGATGGAGTCTCAGGTGAAGCATGCTGTGGTTGTTAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTTACTCAGGTTAGAGTCAAGTTTTTGGATGATCACAACCGTTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTACTTGAGTCTGAAAGAGAAGCAAGGAGGTTGCGCTAG 312 0.4744 MPFLGFVTPFSSTGKIRAAATHTFFSVSLTFVVFAQIRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2564 103 ProSitePatterns Ribosomal protein S28e signature. 94 102 IPR028626 -
Dere01g2564 103 Gene3D - 38 103 IPR012340 -
Dere01g2564 103 Pfam Ribosomal protein S28e 42 102 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere01g2564 103 SUPERFAMILY Nucleic acid-binding proteins 39 103 IPR012340 -
Dere01g2564 103 Hamap 30S ribosomal protein S28e [rps28e]. 39 103 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere01g2564 103 PANTHER 40S RIBOSOMAL PROTEIN S28 39 103 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere01g2564 103 CDD S1_S28E 44 103 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere01g2564 103 FunFam 40S ribosomal protein S28 37 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2564 Dere-ChrDere01 40452847 40455307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2564 39 103 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.16e-36 117