Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2551 ATGAGAACTTCGTGGGCAGATTCTGTCGACTATTCAGCCATTGGTTCTTCAGATAGCAATGCCGCTCGTCCTTCCCGGTCAGCATATGTTCCACCACATCTTCGCAATAAGCCAACATCTGAGCCCCCTGTAACATCACACCCATCGTTGTTACCAGCTAATGATCGGGTAAATTATGGCGGGCCAACTGCTGGTTTTCGTGGAGGCAGTTCTTTTAGTAAGCCTGATTATGGAAGGCAGGAACATGGTTATAGTGGTAGAACTGGTGGGGGCTGGAACAATAGAGGCGGAGGGTGGGACCGTGGAAGGGAGCGTGAGGTGAACCCATTTGAGAATGATGAAGCTACAGATCATACTTTTAGTGAGCAAGAAAACACAGGCATTAACTTCGATGCTTACGATGACATCCCTGTGGACACTAGTGGGGAGAATGTGCCTCCACCGGTAAATACTTTCGCAGAAATAGACTTGGGTGAGTCAGTGAATCAAAATATACGGAGGTGCAAGTATGTCAAACCAACTCCAGTTCAGAGGTATGCCATACCAATTTCTCTAGCAGGGCGAGATCTGATGGCTTGTGCTCAGACAGGATCAGGCAAGACAGCTGCTTTTTGCTTTCCTATTATAAGTGGAATCCTGAGAATGCCGCATGTTCAAAGACCACGTGTAGCGCGAACTGCCTTCCCTCTGGCTCTTATCCTTTCTCCTACGCGGGAGCTTTCATGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGGGCACCAATTAACCAACAGTTGCGGGAGCTTGAGAGGGGAGTTGATATTCTTGTGGCAACTCCAGGACGACTGGTAGATTTGCTTGAGAGGGCTAGGGTGTCACTGCAAATGATCAGATATTTAGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCTTCAAGGCATGAGACAGACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTTGAAAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAGAGAGTGGAATATGTCCTTGAGTCTGACAAAAGAAGCCATCTCATGGACCTTCTTCACGCTCAGAGAGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCGTTGGAACACTGGTTGTGTATCAATGGGTTTCCTGCAACTAGCATTCATGGTGACAGATCACAGCAGGAAAGAGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACAGATGTTGCGGCACGTGGCCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGAATAGGTAGAACTGGGAGGGCTGGTAAAATGGGATTAGCAACGGCCTTCTTTAATGACAATAATCTGTCATTGGCTAAGCCATTGGCTGACCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGCTATGCAGCAAGAGCTTCCTACGGTGGTGGCAACAGAAATAGGCGTTCTGGGGGAGCCCGTTTTGGTGGCCGTGACTATAGGAGGGAGGCTCAGCATAATAAAGGAGCAGACTACTATGGTGGAACAGGTGGATACGGGGTTCCTGCTAGTTATGGTGGAGGGTATGGTCCTCCAGGGGTTACTAGTGCTTGGGATTAA 1821 0.4673 MRTSWADSVDYSAIGSSDSNAARPSRSAYVPPHLRNKPTSEPPVTSHPSLLPANDRVNYGGPTAGFRGGSSFSKPDYGRQEHGYSGRTGGGWNNRGGGWDRGREREVNPFENDEATDHTFSEQENTGINFDAYDDIPVDTSGENVPPPVNTFAEIDLGESVNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPLQGMRQTMLFSATFPKEIQRLASDFLENYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDYRREAQHNKGADYYGGTGGYGVPASYGGGYGPPGVTSAWD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2551 606 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 543 - -
Dere01g2551 606 SMART ultradead3 169 380 IPR014001 -
Dere01g2551 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Dere01g2551 606 MobiDBLite consensus disorder prediction 1 103 - -
Dere01g2551 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 543 IPR001650 -
Dere01g2551 606 Pfam DEAD/DEAH box helicase 174 354 IPR011545 GO:0003676|GO:0005524
Dere01g2551 606 MobiDBLite consensus disorder prediction 1 24 - -
Dere01g2551 606 Gene3D - 367 548 IPR027417 -
Dere01g2551 606 Pfam Helicase conserved C-terminal domain 390 504 IPR001650 -
Dere01g2551 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 519 IPR027417 -
Dere01g2551 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Dere01g2551 606 Gene3D - 105 366 IPR027417 -
Dere01g2551 606 FunFam ATP-dependent RNA helicase RhlB 368 547 - -
Dere01g2551 606 CDD SF2_C_DEAD 377 513 - -
Dere01g2551 606 CDD DEADc_DDX3_DDX4 151 371 IPR044763 GO:0003724|GO:0005524
Dere01g2551 606 SMART helicmild6 423 504 IPR001650 -
Dere01g2551 606 FunFam Probable ATP-dependent RNA helicase DDX4 112 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2551 Dere-ChrDere01 40343893 40350143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2551 148 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.378 3.29e-60 204