Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2539 ATGGACAAGTCTGACAGAGAGACCCTTGACTTCATGAACGTTCAGTCTTTCTCTCAACTCCCTTTCATCCGACCTCCGCCTCTCAAAGAAAAGCCCGTTAAGCTTTTCGGCATTGAATTCCCCAACTCGGACTCACCTTCCGCCCCTGACGACGCCGACTCAGCCGAAACAGCTAACAATAATGCTTTCGACCTTGATAACAAGGACAGCACAGCCACCGCCGACAACGGCGAGAGTAGCCGCCGGTTCGAATGCCATTACTGTTGTAGAAACTTCCCCACTTCTCAAGCCTTAGGCGGCCACCAAAACGCCCATAAACGAGAGCGTCAGCACGCCAAACGAGCCCACCTTCAGTCGGCTATGGTGCACAATGGCCTCTCCGTGGACGCCGCCCAAGTCTACGGCCTCATGAACTACCGGCTCGGCTCGGCTCCCGCGCAGCCAATATCTTATCCGACGTGGCATAATAGTAACTCGAGCAGTGGAAGGCTTTATGGAAGCCATGGTGCTAGTTCCTATCCTCATCTGCAACCCATCAATGGTAGCCCCTTGGCCTTGTGGCGAATCCCCACCGTCCAAAGTAACCCTACTGCTTTGAACCGTGACCGTTCGTTGCACTTACAGCATCCATTGCCCTTGTTTGCTGGCGACGAAATCAACGTCAGGACTTCGCCGGTTGTCGTGTCCGCTTCGCAAAATCGGCTTGTCTATGATTCTAAACCCACCGTCCAAGACCATGTGAGTTTGGATCTTCATCTGTAA 762 0.5328 MDKSDRETLDFMNVQSFSQLPFIRPPPLKEKPVKLFGIEFPNSDSPSAPDDADSAETANNNAFDLDNKDSTATADNGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHNGLSVDAAQVYGLMNYRLGSAPAQPISYPTWHNSNSSSGRLYGSHGASSYPHLQPINGSPLALWRIPTVQSNPTALNRDRSLHLQHPLPLFAGDEINVRTSPVVVSASQNRLVYDSKPTVQDHVSLDLHL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2539 253 Gene3D Classic Zinc Finger 61 133 - -
Dere01g2539 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Dere01g2539 253 MobiDBLite consensus disorder prediction 47 77 - -
Dere01g2539 253 SUPERFAMILY beta-beta-alpha zinc fingers 80 111 IPR036236 -
Dere01g2539 253 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Dere01g2539 253 PANTHER ZINC FINGER PROTEIN GIS 1 253 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Dere01g2539 253 MobiDBLite consensus disorder prediction 36 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2539 Dere-ChrDere01 40246267 40247028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2539 1 253 C2H2 Transcription Factor Family AT3G58070 40.441 2.64e-47 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2539 01 40246267 40247028 Dere02g1320 02 12703494 12704216 CCT
Dere01g2539 01 40246267 40247028 Dere01g2539 01 40246267 40247028 ECH