Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2530 ATGATCAAAGGCAGTCACTGTACTGCCACGTGTCTTGTTGTGTGGCTGTTTGGGCGTGTCATGTGCAGCGAACCCGAAATAACCGAAGGACAACGACGAGCGTCGATGATCCGATGGTCAGCATCGAAACCAACAATAGATTCTTTACTTCGATCTCCATACCGGGGATACCATGCGCAACTTCCGGAACTCTTGACTCGTTGGGCTCGAAATTTTCTACCGGGTATTTGTGTTGTTCTGGTCTGCTCTTTGTTCATATCTTGTGGTTTTGTTTTTTCTTTTGATTGATGTAGCATGCTTGTAGAAAACTCAAAGCAGATCAGACTGGACTTAAGTAGAGTTTTGGGTCCTAGTCATTGTGAGAGAAATACTGTCAGATCTGGATCAGCAATGGCTCCTGGAGGCAGTGCTTGCAAGGAAGTTCTTGAGTCTCACCCAACAATATCAGATTATGACATAGCCAAGTCCAAACATGACGCAAATAGTAATAGTCCTCTTAGAAAGTCTAGTGCTGTTTTTGGTGGAAAACATGGAAGTCATTCAAAGAATGGTGTGCATGACTTACTTGAGTGTCCTGTTTGCAAGAATTTAATGTATCCCCCTATTCACCAGTGCCCAAATGGCCACACTTTATGTTCAAACTGTAAGATTGGTGTGCATAATCGTTGTCCAACTTGTCACTATGATCTTGGAAACATAAGATGTTTAGCTCTGGAGAAAGTGGCTGAGTCATTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATTTTCGCATACTATACCAAGCTTAAGCATGAGCAAAATTGCCGATTTCGTCCATATAATTGCCCCTATGCTGGGTCTGAGTGCTCTGTGGTGGGTGACATTCCAACTCTGGTCGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAACCATCGATATGTCAAATCAAACCCACATGAAGTGGAAAATGCAACATGGATGCTAACTGTTTTCAATTGTTTTGGAAGGCATTTCTGCTTACACTTTGAGGCTTTTCAGATTGGTATGGCTCCAGTTTATATGGCCTTTTTACGATTCATGGGGGATGATAATGAGGCAAAGAAATTCAGCTATAGCTTGGAAGTTGGGGCAAATGGCCGCAAGCTCATATGGCAAGGAATTCCAAGGAGTATTCGCGACAGTCATAGGAAAGTTCGTGACAGTCAAGACGGACTTATTATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGCGACAGACAGGAGTTAAAGTTGAGGATTACTGGGCGTATATGGAAAGAAGATTGA 1320 0.4295 MIKGSHCTATCLVVWLFGRVMCSEPEITEGQRRASMIRWSASKPTIDSLLRSPYRGYHAQLPELLTRWARNFLPGICVVLVCSLFISCGFVFSFDXCSMLVENSKQIRLDLSRVLGPSHCERNTVRSGSAMAPGGSACKEVLESHPTISDYDIAKSKHDANSNSPLRKSSAVFGGKHGSHSKNGVHDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIGVHNRCPTCHYDLGNIRCLALEKVAESLELPCRYQSLGCHDIFAYYTKLKHEQNCRFRPYNCPYAGSECSVVGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWKED 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2530 439 Pfam Seven in absentia protein family 233 432 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere01g2530 439 ProSiteProfiles Zinc finger RING-type profile. 191 227 IPR001841 -
Dere01g2530 439 SUPERFAMILY TRAF domain-like 244 436 - -
Dere01g2530 439 CDD RING-HC_SIAHs 189 227 - -
Dere01g2530 439 FunFam E3 ubiquitin-protein ligase SINAT5-like 300 432 - -
Dere01g2530 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 299 IPR013083 -
Dere01g2530 439 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 300 432 IPR008974 GO:0005515
Dere01g2530 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 243 IPR013083 -
Dere01g2530 439 FunFam E3 ubiquitin-protein ligase SINAT3 243 299 - -
Dere01g2530 439 FunFam E3 ubiquitin-protein ligase SINAT5-like 143 242 - -
Dere01g2530 439 SUPERFAMILY RING/U-box 185 231 - -
Dere01g2530 439 ProSiteProfiles Zinc finger SIAH-type profile. 244 304 IPR013010 GO:0008270
Dere01g2530 439 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 168 438 - -
Dere01g2530 439 CDD Sina 305 433 - -
Dere01g2530 439 MobiDBLite consensus disorder prediction 159 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2530 Dere-ChrDere01 40143629 40148972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2530 131 439 C3H Transcription Factor Family AT2G41980 80.583 0.0 527