Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2525 ATGGAGCTGGCGTTGAGCTTAGGAGACGCACCAAAGCCCTTTACTTTTCTTGACAAGGTCACAAAAATGCCCAACAAAGAACCTGGGTTTTGCATAGCACTGGCCACTGGTTTCACTGCCAAAAACTCGCAAGACAAAAGGTGGAATCATAGAGAAGGCGATGAAGACAGTAGGAGTTCATCAGATCCGCCTGTTCAGCTCGATCTCCTTCCTTTGACACCGCTTCCTCCTCCCCCTCCGCCTTCTCGCCTTCCAATTCCTTGGCTCTCCCGTCCATTGGGTGGTGATGGGGTTTCATCCGATGGAGGAGTGACTGTGAGGGGTTTGGATGTGAACCGTGTGCCGGCAGCCGTAGAGGAGGCGGACGACGCTACTGCGCTCTCATCCCCTAACAGTGGAATCTCATCATTTCAGATGGATTTCTGCGTTAGAAATAGCAACGACAGCGGCAGAAACAAGGGAGAGCACGAGGGCAACGCCGACAGACCCAGCGACGATGAAGAAAACGGATCAACTCGCAAGAAACTCAGACTCTCCAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTCGCTCTGGCAAAGCAATTAAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGAAGGGCGAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGTATTTAAAGAGATGTTGCGAGACGCTGACGGAGGAGAATAGGAGGTTACAGAAGGAGGTGCAAGAGTTAAGGGCTTTAAAGACATCCCAGCCGTATTACATGCAGCTGCCAGCCACCACCCTCACCATGTGTCCCTCTTGTGAAAGGGTCGCTACCAACTCTTCTGCCGGAACCACCGCCTCCCCTACCGGCAATGCTTCTCGAATCCCAGTAGCCTTGTCTCTCGGCAAACCCAGAATAGTCCCCCTCGCCGATGGTCAAGCCCACGAGCACCAGGCCCAGGCCCAGGCCCAACTAACGGCCTCGTGA 1017 0.5221 MELALSLGDAPKPFTFLDKVTKMPNKEPGFCIALATGFTAKNSQDKRWNHREGDEDSRSSSDPPVQLDLLPLTPLPPPPPPSRLPIPWLSRPLGGDGVSSDGGVTVRGLDVNRVPAAVEEADDATALSSPNSGISSFQMDFCVRNSNDSGRNKGEHEGNADRPSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCERVATNSSAGTTASPTGNASRIPVALSLGKPRIVPLADGQAHEHQAQAQAQLTAS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2525 338 ProSitePatterns 'Homeobox' domain signature. 204 227 IPR017970 GO:0000981|GO:0006355
Dere01g2525 338 SMART HOX_1 171 233 IPR001356 GO:0003677
Dere01g2525 338 MobiDBLite consensus disorder prediction 149 177 - -
Dere01g2525 338 SMART halz 229 272 IPR003106 GO:0006355|GO:0043565
Dere01g2525 338 Pfam Homeobox associated leucine zipper 229 263 IPR003106 GO:0006355|GO:0043565
Dere01g2525 338 ProSiteProfiles 'Homeobox' domain profile. 169 229 IPR001356 GO:0003677
Dere01g2525 338 Coils Coil 235 265 - -
Dere01g2525 338 MobiDBLite consensus disorder prediction 69 87 - -
Dere01g2525 338 CDD homeodomain 173 230 IPR001356 GO:0003677
Dere01g2525 338 Pfam HD-ZIP protein N terminus 26 137 IPR006712 GO:0005634
Dere01g2525 338 Pfam Homeodomain 173 227 IPR001356 GO:0003677
Dere01g2525 338 SUPERFAMILY Homeodomain-like 164 230 IPR009057 -
Dere01g2525 338 Gene3D - 177 227 - -
Dere01g2525 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 299 - -
Dere01g2525 338 FunFam Homeobox-leucine zipper protein 18 158 234 - -
Dere01g2525 338 MobiDBLite consensus disorder prediction 44 61 - -
Dere01g2525 338 MobiDBLite consensus disorder prediction 42 104 - -
Dere01g2525 338 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2525 Dere-ChrDere01 40086877 40088260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2525 23 288 Homeobox Transcription Factor Family AT2G44910 46.535 1.83e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere01g2525 HD-ZIP_N 2.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2525 01 40086877 40088260 Dere02g1338 02 12913954 12915371 CCT
Dere01g2525 01 40086877 40088260 Dere01g2525 01 40086877 40088260 ECH