Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2524 ATGGGGGAAGAGACATCCGATGCGATGAACCTTGATTTGAACCTGGGTCCTGGTCCAGAGCCAGCAGCTGGTTCCATAACCAATGAACCCGTGAGCTTAGAGGATTGGATTGCGGAGCCTTTTCATAGAGTTAGCGAAGCAGTAAGACATAGGGCTCGACAAAGGTGGAGATGGCGGCAACTTCATCTTAACCCTAGTGAAGCCCATCGGAGCATTGTTATTTCACCTGAAGCGCATCGGAGTATTCTTTTTTCTCCTGATGCCCAAAATATCTCAATGGAATTAAATCATTTGTTGGTCAACCCTGGTGATGGAAGTGCATTACAGGCTGGTGAAGGTAGCGTGGCAGCTGAAGAAAGAACACAGGAGGCACCAAAAGCTTGTGAAAATAACAATGGTGTTACGGAGGATGAGGCTTCAGATAAGAAGGACGTTGTTGAGAAAAATAGTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGTCATTTATTTTGTTGGCCATGCCTTTATCGCTGGCTGCATGACCATTCTGATGCTATGGAATGCCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACTCCAATATATGGTCGTGGGAACAATGTCCGGGAACCCAAGGATGATCCTACTCTTAAAGTCCCTCTCAGACCCCATGCTAGGCGTGTAGAAAGTCTGAGACAAACCATTCATAGAAATGCATTTGCATTCCCAGTGGAAGAGATGATTCGACGTCTTGGAACTAGAATTGATCTCTCTCGAGATATAGTTCTACCACATGAGCCTGACAATGTACGTGAAACAGCAGAAAGAACTACTACCTTGCTAAATAGGTTTTTGACATCTCGAGCAATACGGAGAGAGCATAATCATGGGGCAGCCCCAGATGATGTAATGGATTTAACTCAAAACAACATTGGCAGCCCTGAGGCGGGGGATAACCGCCGGGTTCAATCACTTTTACTTCGAAGAACACAATCACATAGAACAACACTTTCTTCCCTTTCATCAGCTCTGAGTTCTGCTGAGAGATATGTTGAGGCATATATCCGCAGCCATTCTATTGGTAGAAACCAAGAGCAACCTCCACCAGTGGATGACAGAGATTCCTTTTCAAGTGTTGCTGCTGTTATACATTCAGAAAGTCAAGTAGACACTGCCGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCTTCGCGAGTCTCTGATGTGGATAGTGGAGATTCTCGTGCTCCCAGGCGAAGACGTTTAAACTAA 1329 0.45 MGEETSDAMNLDLNLGPGPEPAAGSITNEPVSLEDWIAEPFHRVSEAVRHRARQRWRWRQLHLNPSEAHRSIVISPEAHRSILFSPDAQNISMELNHLLVNPGDGSALQAGEGSVAAEERTQEAPKACENNNGVTEDEASDKKDVVEKNSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHDHSDAMECPVCKGEVTFKNVTPIYGRGNNVREPKDDPTLKVPLRPHARRVESLRQTIHRNAFAFPVEEMIRRLGTRIDLSRDIVLPHEPDNVRETAERTTTLLNRFLTSRAIRREHNHGAAPDDVMDLTQNNIGSPEAGDNRRVQSLLLRRTQSHRTTLSSLSSALSSAERYVEAYIRSHSIGRNQEQPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2524 442 SMART ring_2 159 199 IPR001841 -
Dere01g2524 442 SUPERFAMILY RING/U-box 155 213 - -
Dere01g2524 442 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Dere01g2524 442 MobiDBLite consensus disorder prediction 420 442 - -
Dere01g2524 442 CDD RING-HC_AtRMA-like 157 200 - -
Dere01g2524 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 122 325 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere01g2524 442 FunFam Zinc finger family protein 140 213 - -
Dere01g2524 442 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Dere01g2524 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 243 IPR013083 -
Dere01g2524 442 MobiDBLite consensus disorder prediction 409 442 - -
Dere01g2524 442 MobiDBLite consensus disorder prediction 109 147 - -
Dere01g2524 442 Pfam Zinc finger, C3HC4 type (RING finger) 159 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2524 Dere-ChrDere01 40053370 40054698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2524 1 433 C3H Transcription Factor Family AT3G58030 53.084 8.60e-136 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2524 01 40053370 40054698 Dere01g2524 01 40053370 40054698 ECH