Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2521 ATGCAATTTTGTTGGATGGTCAAGTCTCAACTTTTAGCAGTCATCTTCAGTATCTTCGCCCTCACCGAAGTTGGCTGCTTTTATTTCAATTTCCCCACCTTCAAACCAAAAGATCAAAATCAATTAATATTGAGCGATTATTCGCGTGTATTCAGAGAGGCCATCCAAGTGACACCTGATGCTTACGGTGAAGACTTGAGGAACAGATCCGGAAGGGCCTTCTACCATAAGGCATACAGAGTGTGGAGCAAGAAGAAGAACCAAACTGCATCGTTTAATACCACCTTTGTCCTCAACATCAACCCCCAAACTCCTTCAAACGCTGGTGCAGGCGAAGGTTTGGCCTTCATATTAACTGGTGATACCACTCTCCCACCCAACAGCTATGGAAGATGGCTTGGCATTGTAAACTCTACTACGAATGGTACTTCTCGTGCTGCCATATTGGCTGTGGAGTTCGATACCAGAAATAACTCCCCCGAAGATGGTCCTGACGACCATGTTGGCGTGAACGTGAATGGTGTTTACTCCATCAAACAGGTTCCATTACTGCCCTTGGGGATCAATATTTCATCGGCCATCAATGTGACGGTGAGAGTTCAGTATCTTAATGATACACTCTCTATTTTTGGTTCCATGACTGGAACCAAAGAAGAAGACATGAAGCTCTTGTTGAAATCCCCACCTCTCAATCTGTCATCCTATCTCCCAGAGGAGGTCTTTCTGGGGTTCTCTGGTTCCACAAGTGATTTCACTGAGCTGAACTGCATCAGAGCATGGGAGTTCAACGGTGTAGATATTGGAGACGGAAATCAAGAGCTGTTGTGGGTTTGGATCACAGTTCCAGCGGCGGTGATAATCGCCGGTGGGGTGTTGTTTTTCTTGATTTGGCAGAAGAGACGAGGTAGGGAGATGGCAGAGGATGCGTATCCTAGGATAGAAGATCAGATTCAATGTTCCTCGATGGCTCCGAAGAAGTTCCGACTGAGGGAAATCAGAAAGGCGACAGGCTATTTTAATCACCTAAATAAGCTCGGGGAAGGTGGTTTCGGAACAGTGTATAAAGGACACCTCGGAACCAAGGAGATAGCTGTGAAGAGAGTCTCCAAGAATTCACGTCAGGGGAAGCAAGAATTCATTGCAGAAGTCACAACAATAGGCAGCCTTCACCACAAGAATCTGGTTAAATTGATCGGGTGGTGCTACGAGAGAAGAGAACTCCTCATCGTCTACGAGTTCATGCCCAATGGGAGCCTCGACAAGTACCTGTTTGGGAGCACAGAGGGATCATCAAAATCAAACCTTTCCTGGGAAACTAGACTCAGTGTGATATACGGTGTGGCACAGGCCCTTGACTATCTTCACAACGGGTGCGAGAAGAAGGTGCTTCACAGGGACATCAAGGCAAGCAACATAATGTTGGACACAGACTTCATTGCCAAGCTGGGAGACTTTGGACTCGCCCGCACCATTCAGAAAAGAAACGAAACTCACCACTCCACAAAAGAGATTGCAGGAACACCAGGTTACATGGCCCCAGAGACGTTTCTGACGGGGAGGGCCACTGTGGAAACCGACGTGTATGCATTTGGGGTTCTAATATTGGAGGTAGTGTGTGGGAAGAGGCCAGGGAATATGTATGCCCAGAACGACTACAAGAACAGCATAGTGTATTGGGTGTGGGAGCTGTATGGGACGGGAAGAATAGTGGAGGGAGTGGATAATAGAATAAGGAAGGAGACAGAGGAGGAACAAGTGGAAGGAGTGCTTGTGCTGGGGCTGGCTTGTTGCCATCCGAATCCACACCGAAGGCCATCAATGAAGACGGTACTGCAGGTGCTCACGGGTGAAGTGGCCCCACCAGAGGTACCAAAGGAAAGACCTGCTTTTGTGTGGCCTGCTACCCCGCCTTCCTTCAACGATAACTCTCTCACATCCGCCCAACTCACTCCTCCGTTCACTGAACTTACTGGCAGATGA 1980 0.4808 MQFCWMVKSQLLAVIFSIFALTEVGCFYFNFPTFKPKDQNQLILSDYSRVFREAIQVTPDAYGEDLRNRSGRAFYHKAYRVWSKKKNQTASFNTTFVLNINPQTPSNAGAGEGLAFILTGDTTLPPNSYGRWLGIVNSTTNGTSRAAILAVEFDTRNNSPEDGPDDHVGVNVNGVYSIKQVPLLPLGINISSAINVTVRVQYLNDTLSIFGSMTGTKEEDMKLLLKSPPLNLSSYLPEEVFLGFSGSTSDFTELNCIRAWEFNGVDIGDGNQELLWVWITVPAAVIIAGGVLFFLIWQKRRGREMAEDAYPRIEDQIQCSSMAPKKFRLREIRKATGYFNHLNKLGEGGFGTVYKGHLGTKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYERRELLIVYEFMPNGSLDKYLFGSTEGSSKSNLSWETRLSVIYGVAQALDYLHNGCEKKVLHRDIKASNIMLDTDFIAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLILEVVCGKRPGNMYAQNDYKNSIVYWVWELYGTGRIVEGVDNRIRKETEEEQVEGVLVLGLACCHPNPHRRPSMKTVLQVLTGEVAPPEVPKERPAFVWPATPPSFNDNSLTSAQLTPPFTELTGR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2521 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 263 IPR013320 -
Dere01g2521 659 SUPERFAMILY Protein kinase-like (PK-like) 321 614 IPR011009 -
Dere01g2521 659 FunFam probable L-type lectin-domain containing receptor kinase S.5 414 620 - -
Dere01g2521 659 Gene3D - 26 268 - -
Dere01g2521 659 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Dere01g2521 659 Pfam Legume lectin domain 29 264 IPR001220 GO:0030246
Dere01g2521 659 CDD lectin_legume_LecRK_Arcelin_ConA 27 263 IPR001220 GO:0030246
Dere01g2521 659 SMART serkin_6 339 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2521 659 Gene3D Phosphorylase Kinase; domain 1 324 413 - -
Dere01g2521 659 Pfam Protein tyrosine and serine/threonine kinase 342 613 IPR001245 GO:0004672|GO:0006468
Dere01g2521 659 ProSiteProfiles Protein kinase domain profile. 339 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2521 659 FunFam Probable L-type lectin-domain containing receptor kinase S.5 324 413 - -
Dere01g2521 659 FunFam Probable L-type lectin-domain containing receptor kinase S.5 26 271 - -
Dere01g2521 659 ProSitePatterns Protein kinases ATP-binding region signature. 345 366 IPR017441 GO:0005524
Dere01g2521 659 PANTHER - 59 621 - -
Dere01g2521 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Dere01g2521 659 CDD STKc_IRAK 345 616 - -
Dere01g2521 659 Gene3D Transferase(Phosphotransferase) domain 1 414 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2521 Dere-ChrDere01 40000355 40002334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2521 70 630 Receptor kinase-like Gene Family AT5G55830 37.375 7.50e-120 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Dere01g2521 PK_Tyr_Ser-Thr 2.3e-52 CL0016