Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2516 ATGTTTTCGCGGTTGGCAAGGATGGTTTCTGCGTGCTTGAGACCGGTCAGGCGGTATGCCCGTATGAACAGGGATGATATCGACGATTCTTCCACCACCGAAGACGCTCTCCTCTGGTGCAAGGACCTCGAGAAGCACTCCTGCGGCGAATTCTCTTTTGCTGTTGTTCAGGCCAATGAAGTAATTGAGGATCAAAGCCAAGTTGAGACGGGGCCTGACGCCGTGTTCGTTGGGATATACGATGGCCATGGCGGTCCTGAAGCGTCCCGGTTCATCTGCGACCACCTCTTCCATCATCTAATGAGGATTGCTCGAGAAACTGGTACTATATCTGAAGATATACTCAGGAATGCCGTTTCTGCTACTGAAGATGGTTTTCTGACTCTTGTTCGAAGGACGTATGGAGTAAAGCCATTGATAGCAGCAATGGGTTCCTGTTGTCTGGTGGGTGTTATTTGGAAAGGGACATTATATATTGCCAATCTTGGTGATTCTCGTGCTGTAATTGGCTCTGTGGGTGGGTCTAACAAGGTCATTGCTGAGCAGTTGACCAGAGAGCACAATGCTAGCAGAGAGGAGGTTAGGCGTGAACTCAGGTCTTTGCATCCAGAAGATTCACAAATTGTGGTCATGAAGCACGGAACATGGCGAATTAAAGGCCTCATTCAGGTATCCAGATCTATAGGTGATGCATATTTGAAGAGACCAGAGTTTGCTCTAGATCCTTCCTTCCCGCGATTCCACCTGCCTGATCCTATCCGCTGCCCTGTGCTCACAGCAGAACCATCTATATGTACCAGAGTTTTACAACCAAATGATAAATTTCTGATATTTGCATCTGATGGGCTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATAGTTTATAACAGCCCACGAACTGGGATTGCAAGAAGACTTCTGAGAGCTGCCCTAAATGAGGCAGCTAGGAAACGCGAAATGAGATTTATAGACATTCAGAAGGTTGAGAAGGGGATCAGGCGGTTTTTCCATGATGACATCACAGTTGTAGTTGTCTACATAGACCAGGAGTTGCATGGAAAGAAGATGACCGTCCCCGAGTTGTCCATCAGAGGTTTCGCCGACAAGGTTGGACCATCAAATCTTAAAATTGTGGGGAACTAA 1149 0.4726 MFSRLARMVSACLRPVRRYARMNRDDIDDSSTTEDALLWCKDLEKHSCGEFSFAVVQANEVIEDQSQVETGPDAVFVGIYDGHGGPEASRFICDHLFHHLMRIARETGTISEDILRNAVSATEDGFLTLVRRTYGVKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSVGGSNKVIAEQLTREHNASREEVRRELRSLHPEDSQIVVMKHGTWRIKGLIQVSRSIGDAYLKRPEFALDPSFPRFHLPDPIRCPVLTAEPSICTRVLQPNDKFLIFASDGLWEHMTNQEAAEIVYNSPRTGIARRLLRAALNEAARKREMRFIDIQKVEKGIRRFFHDDITVVVVYIDQELHGKKMTVPELSIRGFADKVGPSNLKIVGN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2516 382 SMART PP2C_4 44 347 IPR001932 -
Dere01g2516 382 PANTHER PROTEIN PHOSPHATASE 35 347 IPR015655 GO:0004722|GO:0006470
Dere01g2516 382 SUPERFAMILY PP2C-like 56 350 IPR036457 -
Dere01g2516 382 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Dere01g2516 382 Pfam Protein phosphatase 2C 69 318 IPR001932 -
Dere01g2516 382 Coils Coil 180 200 - -
Dere01g2516 382 ProSiteProfiles PPM-type phosphatase domain profile. 50 349 IPR001932 -
Dere01g2516 382 FunFam Probable protein phosphatase 2C 42 41 357 - -
Dere01g2516 382 Gene3D - 20 358 IPR036457 -
Dere01g2516 382 CDD PP2Cc 51 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2516 Dere-ChrDere01 39967902 39970665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2516 1 379 PP2C-type Phosphatase Gene Family AT5G06750 70.256 0.0 545
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2516 01 39967902 39970665 Dere02g1351 02 13002337 13005047 CCT
Dere01g2516 01 39967902 39970665 Dere01g2516 01 39967902 39970665 ECH