Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2510 ATGGATGCTCGTAAGAGAGGGAGGCCTGAGGCTGGCGTTAACGTTAATGGCGGCCTCAAGAAGTCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCTTTTGGGGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCTCAGATGATGAATCTAGCCCCTGTTGCACCTCCAGCATCTAGAAATGTTGCAGCCCCACCACTGGTCCATAATGGGTCCACTCCTGCTGTTAAATCTCGCATATGCAACAAGTATAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGTCATTTTGCACATGGTGAATGGGAACTTGGCAAGCTGATTGCTCCATCAGTAGAAGATCATCGTGCCATGGGACCTATTGCAGGTCGAATTGCCCCCAGCCGAATGGAGCCACCACCTGGTCCTGTGGCCAGTTTTGGTGCCAACGCTACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCCAAGCAGATTTGTCGCCAAACTGGAGCCAAACTATCGATTCGGGATCATGAGTCAGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAACAAATTAAAGAGGCAAGTAACATGGTGAAAGAGTTGCTCGCAACTATCTCAATGTCTGCACCGCCTAAATTCCCTGGTGTCCCTGGTGCCCCTGCCCCACCGGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTTGGGGAAAGATGTCACTTTGCACATGGGGCTGCTGAATTGCGTAAATCAGGAGTATGA 882 0.4864 MDARKRGRPEAGVNVNGGLKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPVAPPASRNVAAPPLVHNGSTPAVKSRICNKYNSAEGCKFGDKCHFAHGEWELGKLIAPSVEDHRAMGPIAGRIAPSRMEPPPGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSAPPKFPGVPGAPAPPGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2510 293 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Dere01g2510 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Dere01g2510 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Dere01g2510 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Dere01g2510 293 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Dere01g2510 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Dere01g2510 293 SMART kh_6 166 236 IPR004087 GO:0003676
Dere01g2510 293 Pfam KH domain 170 233 IPR004088 GO:0003723
Dere01g2510 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 132 IPR045877 GO:0003729
Dere01g2510 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Dere01g2510 293 SUPERFAMILY CCCH zinc finger 258 289 IPR036855 GO:0046872
Dere01g2510 293 MobiDBLite consensus disorder prediction 1 31 - -
Dere01g2510 293 CDD KH-I_AtC3H36_like 170 235 - -
Dere01g2510 293 Gene3D - 92 130 - -
Dere01g2510 293 Gene3D - 259 291 - -
Dere01g2510 293 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Dere01g2510 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Dere01g2510 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Dere01g2510 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Dere01g2510 293 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Dere01g2510 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Dere01g2510 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Dere01g2510 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Dere01g2510 293 SMART c3hfinal6 100 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2510 Dere-ChrDere01 39882121 39887171 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g2510 KH_1 2.4e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2510 01 39882121 39887171 Dere02g1359 02 13045903 13061248 CCT