Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2505 ATGAACGAGAACAAGGTTGATTGGGCAGGGCGAATGCAAATTCAACAGAGCCAAGGACTAAATGGGAATTTCAATTCCGAGTTTGGTAATCGATATTGTCAATACTTGGATACCAATCAGTCCTGGAATATGGGAAGTTGCAGCCAAACACTAGCCATGGCCGGAGGAGCCCAACAGCCACCATACCAAGGCCCTGCCAAATCATCCACCACCATCATCAGCCGTTTCGAATCCCCAGCTTCTGCTTTTTACGCCACAGAACGATGCATGGGGTTTCACCAATATGATTCCCAGCTTGGTAATCCCTCTTTGAGTTCCCAATTCTCGAAGCTTAACGATTTGGAATTCCCTCTTTATCAATCTGACCCCAACTTCGAGTTTTCCAACACCTTGCAAGCAATGGTGAAATCACGATTCAGTGGTAATCAATACTGTAGATCCCCTGAAAAACACAATAATATTTCACGCGGGAATTTGCCCAGCACCAAATATCTTCCTATTGAACAACACAAGTTGTTCATTAACGAGGCTGCATCAGTTAACAGGAACTCATTAAATCCTTATAATGGAAAACAGGATCATACTGTTGCTCTTGGCTCATATAATTTACATGTTGATCAGTTGAGTTTCTCCTCCCAGCAAGAGAAGCGGTCTCCAACACTTTCCTCAGCAGGGAGTGTTTCAACTGTTTCTGGGAACCACGGTACTAATGTCACAGTAACCACAAGTAAAACACGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGGCTTGGAGGTGCTGAGAAGGCTACACCAAAGGCTATATTAAAGATGATGGACTCAGATGGATTGACCATCTTCCATGTAAAGAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGACTCAGCTCAAGGGAAGTCTGAGAAAAGAACCCATATAGAAGACGTGCATCATCTTGACCCCAAAACTGGATTGCAAATAAGAGAGGCACTTCAGCTTCAGTTAGATGTTCAAAGGCGTCTTCACGAGCAGCTAGAGATTCAGAGGAAATTACAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAGCAGCAGAAGACAAGTAATAGCCTCTTGAATACTCAGAATTTGAGCAGCACTACCGATGACGATAAATCAAATAGTCTTAAAGATGTTGAGTTACCAATTTCTGAAGGTTCTGGGAATTCTTTATTCCCTTCCAAGATAAGTTAG 1257 0.4256 MNENKVDWAGRMQIQQSQGLNGNFNSEFGNRYCQYLDTNQSWNMGSCSQTLAMAGGAQQPPYQGPAKSSTTIISRFESPASAFYATERCMGFHQYDSQLGNPSLSSQFSKLNDLEFPLYQSDPNFEFSNTLQAMVKSRFSGNQYCRSPEKHNNISRGNLPSTKYLPIEQHKLFINEAASVNRNSLNPYNGKQDHTVALGSYNLHVDQLSFSSQQEKRSPTLSSAGSVSTVSGNHGTNVTVTTSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKMMDSDGLTIFHVKSHLQKYRIAKYMPDSAQGKSEKRTHIEDVHHLDPKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQKTSNSLLNTQNLSSTTDDDKSNSLKDVELPISEGSGNSLFPSKIS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2505 418 MobiDBLite consensus disorder prediction 371 391 - -
Dere01g2505 418 MobiDBLite consensus disorder prediction 212 238 - -
Dere01g2505 418 SUPERFAMILY Homeodomain-like 241 298 IPR009057 -
Dere01g2505 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 225 389 IPR044848 GO:0003700
Dere01g2505 418 Pfam MYB-CC type transfactor, LHEQLE motif 328 375 IPR025756 -
Dere01g2505 418 FunFam Myb family transcription factor 243 301 - -
Dere01g2505 418 MobiDBLite consensus disorder prediction 371 418 - -
Dere01g2505 418 Gene3D - 243 302 - -
Dere01g2505 418 Coils Coil 331 351 - -
Dere01g2505 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Dere01g2505 418 Pfam Myb-like DNA-binding domain 248 297 IPR001005 -
Dere01g2505 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2505 Dere-ChrDere01 39788605 39791083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2505 242 411 G2-like Transcription Factor Family AT3G04450 51.149 1.78e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g2505 Myb_DNA-binding 5.4e-07 CL0123