Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2504 ATGTATCATTCTTGGCAACCACAAAAGGTTGGAAGATCGGAACTGCTATGTTTAGAGCCCATTGATGAGGTCTGCTTGAACTTGGAACAAAATGAGCAATATGGGTTTGATCTTCCAGGTTTATGTTTTGAGTTTCCAAATACGACGACCTTTGATTCACAGTCATTTTTGTGTCAATCTTCTGGGGACAACTTCACTGATACAACCCAACAAGATGATGGCTCAACCACTCAGTACGGTACACTTGCGTGCCATGATATGCCACTTGATCAGCCAAATAATAACAAGTATTCCCGTCCTTGTGTCCCTTGTGGCAACTATGTTTCAAGGACAGGCAAGAAAAGAATGAGGTGGACCGAAGATCTACATGACCAATTTGTTATGGCTGTCAACCGCCTTGGAGGTCCTCGAAATGCTAAGCCTAAGGCAATACTAGAGATGATGAATGCAGATGCACTGACCATTATACACGTTAAAAGTCACTTGCAGAAATATCGAACTGCTATGTACATGCAGAAAGCGTTTCAGGAAAGATCCATGGAGAGACATAAAACAGATGGAGTCACTGAGCTTCAACTCATAACGATGCAAATTGAGGAGTCCCGACAACTTCAACTTGAGGTCCAAAGGAGTCTTCATAAACAATTTGAGGCACAACGGCATTTGCAACAGCTAATTGAACTACAGAAGAAGAAGTTCTCTATGTTTGATCACAAGAAGTTGGAGAATAATGGGCTGTAA 741 0.4184 MYHSWQPQKVGRSELLCLEPIDEVCLNLEQNEQYGFDLPGLCFEFPNTTTFDSQSFLCQSSGDNFTDTTQQDDGSTTQYGTLACHDMPLDQPNNNKYSRPCVPCGNYVSRTGKKRMRWTEDLHDQFVMAVNRLGGPRNAKPKAILEMMNADALTIIHVKSHLQKYRTAMYMQKAFQERSMERHKTDGVTELQLITMQIEESRQLQLEVQRSLHKQFEAQRHLQQLIELQKKKFSMFDHKKLENNGL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2504 246 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 167 IPR006447 GO:0003677
Dere01g2504 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 83 233 IPR044848 GO:0003700
Dere01g2504 246 FunFam Two-component response regulator 109 173 - -
Dere01g2504 246 Pfam Myb-like DNA-binding domain 115 166 IPR001005 -
Dere01g2504 246 Pfam MYB-CC type transfactor, LHEQLE motif 196 233 IPR025756 -
Dere01g2504 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 170 IPR017930 -
Dere01g2504 246 SUPERFAMILY Homeodomain-like 112 168 IPR009057 -
Dere01g2504 246 Gene3D - 112 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2504 Dere-ChrDere01 39783757 39785316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2504 99 246 G2-like Transcription Factor Family AT4G28610 48.026 7.21e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g2504 Myb_DNA-binding 4e-08 CL0123