Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2503 ATGCACTTCGTGCTTGAAGAAAGGAGTAGCGGTGAGGAACGAAAAGAGGAAGAAATGGATGATTTGAAAAAGAGAAAGCTAGAAGAAGCCGGCAACGGCGACGTTTCTTCGAAGGAAGAACTTCGCTCTCTGCTTGACCCGCTTGCGAAACCCCAGCTTGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGAATACCACTTCAGAAACCTTGTGTGCTGCATTTCAAGAGCATGGAGAAATCGAAGAAGGGGCTGTGATCTATGATAAAGCAACTGGAAAATCTCGTGGCTATGGTTTCATCACTTACAAACATATGGAATCAACTCATCGTGCATTAAGAGCACCAAGCAAGTTAATTGACGGCAGATTGGCTGTCTGTAATCTTGCTTGTGAGGGCCTGAGTGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTGTCACCAGAAGTCACCAGTGAAATGTTGCTGAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGGTCAGTTGCATATGACAAAGATACTAATGAATCTCGTGGTTTTGGCTTTGTCACATACAAGACAGCAGAAGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTCAAATATGCTGATTCCCACAAGGGTAAAACAGGCCAGCCATCGGTGATTCCAATGACAGCCTTACCTATGGCTCCTGGTTATGTGCAGGTGCAACCAGTTAAATCACATATTAGCACTGCCCCTGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCCGCACCTTCTTATCCAAGCCCTCCTACTGCACCCGCTCCTTATCCAACACAAGGCCAAGTTTCTTATCCTCCGGTTTCTGGGAAGCCAACTCCGCCTGTGGGAATGAGCAACTACCCATATTACTATCCTAAGCAATAA 1035 0.456 MHFVLEERSSGEERKEEEMDDLKKRKLEEAGNGDVSSKEELRSLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHRALRAPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVTSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPSVIPMTALPMAPGYVQVQPVKSHISTAPVGYNYPQTVASYPAPSYPSPPTAPAPYPTQGQVSYPPVSGKPTPPVGMSNYPYYYPKQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2503 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 250 IPR000504 GO:0003723
Dere01g2503 344 FunFam UBP1-associated protein 2C 160 258 - -
Dere01g2503 344 SUPERFAMILY RNA-binding domain, RBD 167 256 IPR035979 GO:0003676
Dere01g2503 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 150 IPR000504 GO:0003723
Dere01g2503 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 243 IPR000504 GO:0003723
Dere01g2503 344 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 43 150 - -
Dere01g2503 344 SMART rrm1_1 174 246 IPR000504 GO:0003723
Dere01g2503 344 SMART rrm1_1 83 155 IPR000504 GO:0003723
Dere01g2503 344 CDD RRM2_NsCP33_like 174 248 - -
Dere01g2503 344 FunFam UBP1-associated protein 2C-like 78 159 - -
Dere01g2503 344 Gene3D - 4 160 IPR012677 -
Dere01g2503 344 SUPERFAMILY RNA-binding domain, RBD 71 159 IPR035979 GO:0003676
Dere01g2503 344 MobiDBLite consensus disorder prediction 302 317 - -
Dere01g2503 344 Coils Coil 12 32 - -
Dere01g2503 344 MobiDBLite consensus disorder prediction 302 344 - -
Dere01g2503 344 Gene3D - 161 260 IPR012677 -
Dere01g2503 344 MobiDBLite consensus disorder prediction 1 38 - -
Dere01g2503 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2503 Dere-ChrDere01 39765508 39769192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2503 169 266 C2H2 Transcription Factor Family AT2G19380 34.615 1.16e-13 70.1