Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2500 ATGGGTTCTTCCTCTCTCTCCAATCCTTCCCGTGACTTGCTTGACGGCTTGAAATTTGGCCAAAAAATCTACTTTGAGGATGTGGGTCTTGGAGCTTCCCCCAAATCCAGTGCCGGTGGGGCGTCCTCCTTCTCCTCTGGGACAGGGGCAAAGAAGGGGAGAGGTGGTGCTGTTCAAGGAGCTCAGCCTCCAAGGTGTCAGGTTGAGGGCTGTAAAGTAGATCTGAGTGACGCTAAGGCTTACTATTCCAGGCATAAAGTCTGCGGTATGCACTCCAAGTCTCCTAGGGTCATTGTCGCTGGTCTGGAGCAAAGATTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGAGAAACGAAGTTGCCGTAGGCGACTTGCTGGCCATAATGAACGTCGTCGAAAGCCCCACCCTAGCTCCTTGTTGACCTCTCCCTATGCTCGACTCTCTTCACCTGTATTTGATAACCATGGCAGAGTTGGCAGCTTTCTAATGGAATTTTCTCCGTCCCGAAAGCTGACTCTGAAGAATGAGTTGCCAGCGTTGAAGTCAACTGAGCAAGTTAATCAAATCTCAGCACCTACCTGGCAGGGCAACTTGGAGACTCCTGAAAATTTCCTGCGAGGTTCAGTGGGCGGGATAAGCTACCCTGGTCCCAGAAATCCTCCAGGTCAAAGCTTTGCGGGAATCACAGACATAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGCCCCGGAAACAGAGCACCAAGCCTTGGGGTGAACAACTTGTATTTTGGAACAACGCCCATGACACAACTTGCTGCATCTTCTAATGGTGCTGCAATCCCTCAACTTTCAAATGGCTCGTGGTGTTTCAATGGCACTGATGCTGGTAATTATTCACATGAGTTAGTCGCTGATGTAGGTCTGGGTCAGAGTTCGCAGCATCTTAATAGTCAACTTCCTACTGAGATTGTGGTGCCAGAGTCTGACCGGAGGCAGTATATTGATCTAGAATCCAGGGCCTATGAGTCTTCTCAGCATATACACTGGCGTTCCCTAAGTCTGTATACCGTGGCTGCCATTGCTTTCCATAAGCACCAGCATTACTACTGA 1116 0.491 MGSSSLSNPSRDLLDGLKFGQKIYFEDVGLGASPKSSAGGASSFSSGTGAKKGRGGAVQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPRVIVAGLEQRFCQQCSRFHQLPEFDQEKRSCRRRLAGHNERRRKPHPSSLLTSPYARLSSPVFDNHGRVGSFLMEFSPSRKLTLKNELPALKSTEQVNQISAPTWQGNLETPENFLRGSVGGISYPGPRNPPGQSFAGITDINCALSLLSNQTWGPGNRAPSLGVNNLYFGTTPMTQLAASSNGAAIPQLSNGSWCFNGTDAGNYSHELVADVGLGQSSQHLNSQLPTEIVVPESDRRQYIDLESRAYESSQHIHWRSLSLYTVAAIAFHKHQHYY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2500 371 MobiDBLite consensus disorder prediction 130 149 - -
Dere01g2500 371 FunFam Squamosa promoter-binding-like protein 14 57 127 - -
Dere01g2500 371 Pfam SBP domain 66 139 IPR004333 GO:0003677
Dere01g2500 371 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Dere01g2500 371 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 296 IPR044817 GO:0003677
Dere01g2500 371 MobiDBLite consensus disorder prediction 32 64 - -
Dere01g2500 371 Gene3D - 56 127 IPR036893 GO:0003677|GO:0005634
Dere01g2500 371 SUPERFAMILY SBT domain 64 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2500 Dere-ChrDere01 39752603 39755661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2500 17 351 SBP-box Gene Family AT2G42200 42.021 9.97e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere01g2500 SBP 2.9e-32 No_clan