Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2493 ATGGCTTTCAGTGTTAATAAGACCTCCAACGAAACAAGCAATCAGCTGGAACCACTCCCACTCCCACCACCTTCACATCATCGTCATCCTCATCAAATTCAAGATCACCGAAGTTCTTTCGGAATGATGCAATCATCTTCCTCCTCTTCTATCCCCGCAAACTACCTAGGCAAGGATTCCGGAGCTTATGATTTAGGTGAATTGGATCAAGCCCTTCTTCTGTATCTCGATGGACAAGCGGACCCCTCCTCCATTAATGTTCAAGACCAAAGACAGAACTCATCATCGTCAGGAATGAGGCCTCCAACTCTAAACATTTTCCCATCTCAGCCTATGCACGTAGACCCACCTTCATCAAAGGCTAGCATGGAATTAGTTTTTCCGCAAAGCAGTGGTTCCAAGAGACCATCAGAGCCGTCCATGAAGTTGGCTAACCCGCGCAACGAAGCCGCCTCTGCACCTGATCAATCAGCCAAAGCCGTCAAGCGGGAGAGCACTCGCAAGGGTCCAACCTCAAGTTCGGAACAGGAAGGACCCAAAACACCTGATCCTAAGACGCTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTGCAGCAGCTAGAGTCAAGTAGGATCAGGCTGAATCAGCTGGAACAAGAGTTACAGCGTGCTAGAACTCAAGGCATATTCTTTGGTGGATCGGGTGCACTTTTGGGAGGTGAGCAAGGCCTTCCTGTCGCTATGGGTGGCATTAGCTCAGATGCTGCAATGTTCGACGTGGAATATGGGAGGTGGGTGGAGGAGCACCATCGGCTAGTGTGCGAGCTAAGAGCTGCAGTTCAAGAGCATCTTCCCGAGAACGAGCTTCGACTATTCGTGGACAACTGCCTTGCTCACTATGACCAAGTCATGAACCTCAAGAGCATTGTGGCTAAAACTGACGTATTCCACCTCGTTTCTGGCATGTGGAAGACCCCTGCTGAACGTTGCTTCATGTGGATCGGTGGATTCAGGCCCTCTGAACTCATTAAGATCATTCTGAATCAAATAGAGCCCCTGACCGAGCAACAAATACTGGGAATCTGTGGTTTGCAACAATCTACACAAGAGGCAGAAGATGCTCTCTCTCAAGGGCTTGAAGCACTGAATCAATCTCTTACCGAAACCATAACATCAGATTCATTGAGTTGTCCCCCCAATATGGCCAACTACATGGGACAGATGGCCGTGGCCATGAACAAGCTCTCCACTCTCGAAGGTTTCGTCAGACAGGCGGATAATCTTCGGCACCAAACGATTCACCGTCTGCATCAGATCCTAACGACGCGTCAAGCAGCAAGGTGTTTGCTGGCCATGGCCGAGTACTCTCATCGTCTGCGAGCCCTCAGCTCTCTCTGGGTCGCACGCCCTCGTCAGGAATAA 1434 0.4986 MAFSVNKTSNETSNQLEPLPLPPPSHHRHPHQIQDHRSSFGMMQSSSSSSIPANYLGKDSGAYDLGELDQALLLYLDGQADPSSINVQDQRQNSSSSGMRPPTLNIFPSQPMHVDPPSSKASMELVFPQSSGSKRPSEPSMKLANPRNEAASAPDQSAKAVKRESTRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGIFFGGSGALLGGEQGLPVAMGGISSDAAMFDVEYGRWVEEHHRLVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSIVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIILNQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSLTETITSDSLSCPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCLLAMAEYSHRLRALSSLWVARPRQE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2493 477 MobiDBLite consensus disorder prediction 84 188 - -
Dere01g2493 477 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700|GO:0006355
Dere01g2493 477 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Dere01g2493 477 MobiDBLite consensus disorder prediction 37 55 - -
Dere01g2493 477 CDD bZIP_HBP1b-like 185 237 - -
Dere01g2493 477 MobiDBLite consensus disorder prediction 123 138 - -
Dere01g2493 477 MobiDBLite consensus disorder prediction 84 104 - -
Dere01g2493 477 FunFam BZIP family transcription factor 184 233 - -
Dere01g2493 477 ProSiteProfiles DOG1 domain profile. 259 473 IPR025422 GO:0006351|GO:0043565
Dere01g2493 477 Pfam Seed dormancy control 277 351 IPR025422 GO:0006351|GO:0043565
Dere01g2493 477 SMART brlzneu 181 244 IPR004827 GO:0003700|GO:0006355
Dere01g2493 477 MobiDBLite consensus disorder prediction 1 16 - -
Dere01g2493 477 Gene3D - 184 232 - -
Dere01g2493 477 Pfam bZIP transcription factor 185 218 IPR004827 GO:0003700|GO:0006355
Dere01g2493 477 Coils Coil 204 231 - -
Dere01g2493 477 MobiDBLite consensus disorder prediction 1 60 - -
Dere01g2493 477 PANTHER TRANSCRIPTION FACTOR TGA9 96 476 - -
Dere01g2493 477 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2493 Dere-ChrDere01 39650846 39656522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2493 53 477 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.732 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere01g2493 DOG1 1.5e-31 No_clan